PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03996_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 103aa    MW: 11743 Da    PI: 6.771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03996_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000581840123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                y C+ Cg + s ks+ ++Hi tH
  Cotton_A_03996_BGI-A2_v1.0 18 YYCEFCGICRSKKSLINSHILTH 40
                                89********************6 PP
2zf-C2H222.23.6e-076081223
                                EETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                +C+ Cg sF+ + +Lk+H+++H
  Cotton_A_03996_BGI-A2_v1.0 60 TCEECGASFKKPAYLKQHLQSH 81
                                6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.24E-71681No hitNo description
SMARTSM00355201840IPR015880Zinc finger, C2H2-like
SMARTSM003550.0145981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3655986IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-56082IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138940.00146081No hitNo description
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MEEEKKVGGA IFKDIRRYYC EFCGICRSKK SLINSHILTH HTDEVNKRGK EEEGASSSNT  60
CEECGASFKK PAYLKQHLQS HSLEDHTFSY ARQGCNSENE EPV
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748492.16e-52PREDICTED: transcription factor IIIA-like isoform X1
RefseqXP_016748493.14e-52PREDICTED: transcription factor IIIA-like isoform X2
RefseqXP_017603196.15e-52PREDICTED: transcription factor IIIA isoform X1
SwissprotQ84MZ49e-21TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0B0NWH31e-54A0A0B0NWH3_GOSAR; Zfy1
STRINGGorai.009G288800.14e-48(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2062733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-23transcription factor IIIA