PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04055_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 255aa MW: 28329 Da PI: 9.917

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04055_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34	6.5e-11	54	106	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l + Cotton_A_04055_BGI-A2_v1.0 54 KRAKRIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 106 9****************************************999877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.3E-17	50	114	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.622	52	115	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-9	54	103	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.36E-11	54	105	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.2E-11	54	108	No hit	No description
CDD	cd14703	1.09E-21	55	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSGLSGKGEK NNGGGKGRHR YSNSIDGCSL MESIEAKKAM SPDKLVELWT IDPKRAKRII 60 ANRQSAARSK ERKARYISEL ERKVQTLQTE ATTLSAQLTL FQRDTTGLTT ENTELKLRLQ 120 AMEQQAQLRD ALNEALKKEV ERLKIATGEI TTPTDTFNLG MHHMPYNQSS FFPPQPEHMQ 180 VDTQNIQMPS FHPLRSNMLT PNQSVVTSSN SQAFADIMRQ DPLGRLQGLD ISSRSSHLVK 240 SESPSISAGE SSGTL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214418	8e-31	AC214418.1 Populus trichocarpa clone POP106-D21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603797.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	2e-90	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1U8J7K9	0.0	A0A1U8J7K9_GOSHI; transcription factor RF2b-like
STRING	Gorai.009G293600.1	1e-163	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	7e-91	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]