PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04070_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 197aa    MW: 21209.3 Da    PI: 8.4795
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04070_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.52e-42181171100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++l
  Cotton_A_04070_BGI-A2_v1.0  18 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRVDAANSLVYEANVRLRDPVYGCMGAISAL 100
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 qqq+++l+ael+++++e
  Cotton_A_04070_BGI-A2_v1.0 101 QQQVQSLQAELNAVRAE 117
                                 *************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.72817118IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-4218115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRRHMLGPP GTLNTITPCA ACKLLRRRCA QECPFSPYFS PHEPQKFASV HKVFGASNVS  60
KMLMEVPESQ RVDAANSLVY EANVRLRDPV YGCMGAISAL QQQVQSLQAE LNAVRAEIIK  120
YKCREANLVP PSSHVAMLSS GAVSVAAPPP ATTQPPPPPP PPPLPTTTAV TTCSIYTQPT  180
TSTDYTTLPN DNVSYFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-47101303123LOB family transfactor Ramosa2.1
5ly0_B2e-47101303123LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605164.11e-143PREDICTED: LOB domain-containing protein 15
SwissprotQ8L5T56e-75LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A0D2QQ341e-140A0A0D2QQ34_GOSRA; Uncharacterized protein
STRINGGorai.009G295000.11e-140(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19272781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.13e-74LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]