PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04160_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 225aa    MW: 24302.6 Da    PI: 8.7319
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04160_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.67.7e-42401391100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA+ r+rdPvyG++g i +l
  Cotton_A_04160_BGI-A2_v1.0  40 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPENQRADAANSLVYEANLRLRDPVYGCMGAIVTL 122
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 qqq+++l+ael+++++e
  Cotton_A_04160_BGI-A2_v1.0 123 QQQMQNLQAELNAIRAE 139
                                 ************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.77539140IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-4240137IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSRDRERLDE IGKKIKTDAG GEMGRRHLLG PPGTLNTITP CAACKLLRRR CAEECPFSPY  60
FSPHEPHKFA AVHKVFGASN VSKMLMEVPE NQRADAANSL VYEANLRLRD PVYGCMGAIV  120
TLQQQMQNLQ AELNAIRAEI LKYKIREVTN NNILPSTHPH THTHTHATLV SGGAVSVAAS  180
SSPLPPPPSI VVSTSSSSSA SSLYTSATSA TGYSSISSDN VPFFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-44321483119LOB family transfactor Ramosa2.1
5ly0_B3e-44321483119LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640959.11e-167PREDICTED: LOB domain-containing protein 15
SwissprotQ8L5T52e-80LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A1U8MC161e-165A0A1U8MC16_GOSHI; LOB domain-containing protein 15-like
STRINGGorai.003G151800.11e-127(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19272781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.12e-81LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]