PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04392_BGI-A2_v1.0
Common NameF383_02492
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 138aa    MW: 15334.6 Da    PI: 10.1088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04392_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.0003932671454
                                HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                d++ ++++ L++l+ +      +K + a++L +A  YI+ L
  Cotton_A_04392_BGI-A2_v1.0 32 DQVSERIAALQQLVSPY-----GKTDTASVLLEAKGYIRFL 67
                                78999*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.551867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.84E-52172No hitNo description
SuperFamilySSF474591.96E-102680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-72777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MMENKRSPFS VDHTGFTSLA SKRQKATKEK KDQVSERIAA LQQLVSPYGK TDTASVLLEA  60
KGYIRFLHEQ VKVLSAPYLQ TMPTNSLQGD DQYNLRNRGL CLAPISCTVG LARSNGADIW  120
APIKTTSPKF DKVISQFN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2658602e-64GU265860.1 Gossypium hirsutum chromosome 14 SNP marker NG0207159 associated with bacterial blight resistance genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632903.11e-100PREDICTED: transcription factor bHLH113-like isoform X1
RefseqXP_017632904.11e-100PREDICTED: transcription factor bHLH113-like isoform X2
SwissprotQ7XJU21e-53BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A0B0PD684e-99A0A0B0PD68_GOSAR; Transcription factor protein
STRINGGorai.005G012400.13e-94(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.55e-56bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]