PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04430_BGI-A2_v1.0
Common NameF383_08065
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 246aa    MW: 28031.9 Da    PI: 8.4698
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04430_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR191.61e-2888175291
                        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++e
  Cotton_A_04430_BGI-A2_v1.0  88 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIMRHRAETRVGCRAMILVRKVSSGKWVVTKFVKE 168
                                 ******************************************9988..99********************************* PP

                        FAR1  85 HnHelap 91 
                                 H+H+l+p
  Cotton_A_04430_BGI-A2_v1.0 169 HTHPLMP 175
                                 ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-2688175IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLVLAVEFRV HGDGNGGMML NPVQAEASSS MENDNETGEN PVEGVFQPGL NEKLDRTSPQ  60
RDDIPEIVLA DEPYVGQEFE SEASAHAFYN AYATRVGFII RVSKLSRSRR DGSAIGRALV  120
CNKEGFRMPD KREKIMRHRA ETRVGCRAMI LVRKVSSGKW VVTKFVKEHT HPLMPGKGRT  180
DCIYDQNPNE HDKIRELTHQ LAIEKKRSAT YKRHLELIFE QIDEYNKSLS KKIQHIVDGV  240
REIENK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5794471e-114JX579447.1 Gossypium hirsutum clone NBRI_GE11686 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632325.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
TrEMBLA0A0B0PQA50.0A0A0B0PQA5_GOSAR; Far1-related sequence 5-like protein
STRINGGorai.005G016700.11e-170(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73022539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-106FAR1 family protein