PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04469_BGI-A2_v1.0

Common Name

F383_33942

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 199aa MW: 23467.9 Da PI: 8.7723

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04469_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.2e-12	12	61	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++E++RR+++++ ++ L +llP++ ++++ ls + + +Av+YIk Lq Cotton_A_04469_BGI-A2_v1.0 12 ERKIIEKNRRNHMKNLYSMLNSLLPHQ--NSKEPLSLPDQVDEAVKYIKRLQ 61 5789********************6..26666***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.75E-6	7	65	No hit	No description
SuperFamily	SSF47459	2.09E-12	7	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.738	8	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-10	10	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-8	12	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-4	14	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MKRSRCSSAK VERKIIEKNR RNHMKNLYSM LNSLLPHQNS KEPLSLPDQV DEAVKYIKRL 60 QTKLKESRER KESLMGRTRS YKCTQSNDST KPAEIRINEK GSAMEVALMT GPGSQYMFYE 120 MIRIFHEDGA HVLNANFWVV GNTIFHIVHA EIGEFGVAKI IKEKLNKFVN EDRCREEELE 180 QELYWDYEIP PETWNFHIM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636698.1	1e-148	PREDICTED: transcription factor bHLH36-like
TrEMBL	A0A0B0N409	1e-147	A0A0B0N409_GOSAR; Transcription factor bHLH36-like protein
STRING	Gorai.008G154300.1	1e-144	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-38	bHLH family protein