PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04544_BGI-A2_v1.0
Common NameF383_09963
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 249aa    MW: 27943.6 Da    PI: 9.0033
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04544_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd++l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Cotton_A_04544_BGI-A2_v1.0 14 KGAWTKEEDQRLIHYIRVHGEGSWRSLPKAAGLLRCGKSCRLRWMNYL 61
                                79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-23564IPR009057Homeodomain-like
PROSITE profilePS5129423.446965IPR017930Myb domain
SuperFamilySSF466891.15E-221397IPR009057Homeodomain-like
SMARTSM007172.7E-131363IPR001005SANT/Myb domain
PfamPF002495.5E-161461IPR001005SANT/Myb domain
CDDcd001678.11E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.0E-1565106IPR009057Homeodomain-like
SMARTSM007173.2E-466103IPR001005SANT/Myb domain
PROSITE profilePS5129410.71166105IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIHYIR VHGEGSWRSL PKAAGLLRCG KSCRLRWMNY  60
LRPDLKRGNF TEDEDELIIK LHGRLPGRTD NEIKNYWNTH IKRKLVSRGI DPQSHRPLNG  120
TAKATPTELD FRNAPTVPKI KPITTATPSL SFKYDESQVK AKSDSLEGGN CTSSGMTTDE  180
EQPSSRPNEL NLELSIGFST NSANSAESKP KVAKPKAECL CWQLGFQRSE ICSNCENTNG  240
LFRYCTTLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-231310526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5818331e-121JX581833.1 Gossypium hirsutum clone NBRI_GE14555 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636144.10.0PREDICTED: transcription repressor MYB6-like
SwissprotP813951e-84MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A0B0PN230.0A0A0B0PN23_GOSAR; Myb-related protein
STRINGGorai.009G263200.11e-180(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-83myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]