PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04813_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 495aa    MW: 54722.2 Da    PI: 8.587
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04813_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30253311259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Cotton_A_04813_BGI-A2_v1.0 253 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILVTTYEGNHNHP 311
                                 7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-33237313IPR003657WRKY domain
SuperFamilySSF1182908.24E-28245313IPR003657WRKY domain
PROSITE profilePS5081129.861247313IPR003657WRKY domain
SMARTSM007741.4E-36252312IPR003657WRKY domain
PfamPF031061.7E-26254311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEPVDHHIVS LVQSSDGIKR VVNEMDFFAH DRSSKQHDKA DYDVHHHHVK TEIAGDGITS  60
SQNLKEKQRV NQLADIRAEL DRINAENQRL KLTLNQVNSN YYALQMHLVS LTQRHRNRIA  120
ESSEANTQMN RPIEEKKHGE GMVARQFMDL VQTETKAEKD ELSESSSEDR CHELSGSPGN  180
TIVESMERRQ KNNKSRNQRE DTPEGLPHPA GWLPNKGPKF NTSKDNEQAQ QTMAMIRKAR  240
VSVRARSEAS MISDGCQWRK YGQKMAKGNP CPRAYYRCTM ATGCPVRKQV QRCAEDRTIL  300
VTTYEGNHNH PLPPAAMAMA STTSAAASTL LSGSMPSADH GIMNSNIVPK GMLPGSPNLI  360
TLSASAPFPT VTLDLTHPPN QRPLHQLHPL SPNWPHNISR LPAHLLGHPI YNQSKLLGTY  420
LSSQGNNELP VHLSQNQMQG HPMVDTAATA AAITADPNFT AALVAAITSI IGNSHRDNSG  480
NNNSTTSRNT GDNNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21239315176WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310690.0KF031069.1 Gossypium hirsutum WRKY transcription factor 1 (WRKY1) mRNA, complete cds.
GenBankKF6698240.0KF669824.1 Gossypium hirsutum WRKY transcription factor 16 (WRKY16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640938.10.0PREDICTED: WRKY transcription factor 42-like
TrEMBLA0A059Q9120.0A0A059Q912_GOSHI; WRKY transcription factor 1
STRINGGorai.002G091300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1924667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-83WRKY family protein