PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04827_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 229aa    MW: 25424.4 Da    PI: 8.4842
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04827_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.5e-213484155
                         AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++aeeAa+a++ a++ l+g
  Cotton_A_04827_BGI-A2_v1.0 34 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAARAYDTAARTLRG 84
                                68********.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.05E-313494No hitNo description
PfamPF008479.9E-143484IPR001471AP2/ERF domain
SMARTSM003802.8E-373598IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-233594IPR016177DNA-binding domain
PROSITE profilePS5103223.7883592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-323592IPR001471AP2/ERF domain
PRINTSPR003674.8E-113647IPR001471AP2/ERF domain
PRINTSPR003674.8E-115874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRRGRGAAAA APASAANAVA RRPALQPSGS IKEPRYRGVR KRPWGRFAAE IRDPWKKTRV  60
WLGTFDSAEE AARAYDTAAR TLRGPKAKTN FPINSSNIPA FPFETNHHHN EGFIDQRRLY  120
PMGDFHDPEV NPQRPTRSSM SSTVESFSGP RPVQPPQKSA DFAVVSTRKY YPRPPPVEPE  180
DCHSDCDSSS SVVDDGDIAL SSCRKTLPFD LNFPPLDEDE DLQCTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2035921472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638633.11e-169PREDICTED: ethylene-responsive transcription factor 3
SwissprotQ9LDE45e-53ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A0D2M8L51e-134A0A0D2M8L5_GOSRA; Uncharacterized protein
STRINGGorai.002G092900.11e-135(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.16e-42ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]