PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04868_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 152aa    MW: 17063.1 Da    PI: 5.0575
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04868_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB167.51.6e-5219114297
                       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                                 +eqd++lPianv+rimk++lP nakisk+aket+qecvsefisfvt+eas+kc++e+rkt+ngdd++walatlGf+dy+ plk
  Cotton_A_04868_BGI-A2_v1.0  19 KEQDHLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRKERRKTVNGDDICWALATLGFDDYAVPLK 101
                                 79********************************************************************************* PP

                       NF-YB  85 vylkkyrelegek 97 
                                  yl k+re+eg+k
  Cotton_A_04868_BGI-A2_v1.0 102 RYLYKFREFEGDK 114
                                 ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.6E-5216142IPR009072Histone-fold
SuperFamilySSF471131.05E-3821147IPR009072Histone-fold
PfamPF008081.3E-272588IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.7E-175270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.7E-177189No hitNo description
PRINTSPR006154.7E-1790108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MAENIGTSND GGGDGGGFKE QDHLLPIANV GRIMKQILPP NAKISKEAKE TMQECVSEFI  60
SFVTGEASEK CRKERRKTVN GDDICWALAT LGFDDYAVPL KRYLYKFREF EGDKAANQVK  120
VSISNSKDDD GDEAQKQQQQ QSPLMFQHDW KQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4218109192Transcription factor HapC (Eurofung)
4g92_B3e-4218109192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6159761e-146JX615976.1 Gossypium hirsutum clone NBRI_GE60289 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016726872.11e-111PREDICTED: nuclear transcription factor Y subunit B-1-like
RefseqXP_017639998.11e-111PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotO822485e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1U8MJ971e-110A0A1U8MJ97_GOSHI; nuclear transcription factor Y subunit B-1-like
STRINGGorai.005G059500.11e-104(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-57nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]