PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04877_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 1172aa MW: 130550 Da PI: 8.9434

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04877_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.4	2.2e-10	47	82	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+eE e +++a +++G++ Wk++a ++ +R+ +++ Cotton_A_04877_BGI-A2_v1.0 47 QWTKEELECFYEAYRKYGKD-WKKVATMIR-NRSVEMV 82 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.856	43	96	IPR017884	SANT domain
SMART	SM00717	8.0E-6	44	92	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.22E-11	44	91	IPR009057	Homeodomain-like
Pfam	PF00249	3.1E-9	47	82	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-5	47	81	IPR009057	Homeodomain-like
CDD	cd00167	3.03E-7	48	82	No hit	No description
SMART	SM01135	5.9E-54	634	735	IPR033471	DIRP domain
Pfam	PF06584	2.0E-31	634	734	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1172 aa Download sequence Send to blast
MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGKRKRKL SDMLGPQWTK EELECFYEAY 60 RKYGKDWKKV ATMIRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYSVMGGSD 120 SEQESNEGMG VSRKPQKRSR GKIRDQPSKS SDKPLPDLLQ FPSANSSCLS LLKRRRSESR 180 PRAVGKRTPR VPISFSHDKN KGERYFSPIR QGMKLKVDAV DDDVAHEVAL ALTEASQRGG 240 SPQVSRTPNR KAETPSSVIN SERMNADSET TSAKIHGSEV DEDACELSLG STEADNADYA 300 KDKNYSRNIE GTGTVEVQQK GKRYYRRKPE IEESVNHLED TKEACSGTEE GQQLCDFKGK 360 FDCEVEDAKT SRASIKGPRK RSKKVLFEGV EDTAFDALQT LADLSLMMPE TADTESSVQH 420 KEEKNEVDKT KLKGNHLVPG AKGSASKTSR HGKHFGHDVR AIPEAKEAHP ANVGMRKMRQ 480 KSSPYKIPKD ETDADSQLGE SPNIEASGEV KNLLSKGKQS NNFVHPKQGK FVRPPEHASS 540 STDQGRDLNN SAPSTIQVSS VNQVNLPTKI RSKRKTDVRK PAIRKGIKSS DNIVKGKISG 600 PVTLFHDGAL DLKEKLCNFL CSYQARRWCA FEWFYSTIDY PWFAKREFVE YLDHVGLGHI 660 PRLTRVEWGV IRSSLGKPRR FSVQFLKEER EKLNQYRESV RRHYAELHAG IGEGLPTDLA 720 RPLSVGQPVI AVHPKTREIH DGSVLTVDYS RYRIQFDSPE LGVEFVMDVD CMPLNPMENL 780 PASLSRQNAA IRKFVENYNE LKMNGQSKES KMEENIKFMQ CDNLENANSP SHTSPSTFSV 840 GNLSQLVKVD SSSPNLQLKI GPTETVYTQQ AINSQPSAVS LVQAREADVE ALSQLTRALD 900 KKEAIVSELR RMNDEVLENQ KGGDNYIKDS DSFKKQYAAV LLQLNEINEQ VSSALLCLRQ 960 RNTYQGTSSG KPLKPSGKIG EQGSQLSSFE SMHHVQESVS HVAEIVESSR RKARSMVDAA 1020 LQAMSSLRKG GKNIERIEDA IDFVNNQLSL NEFSAPAPRS AAPVDSVRSH DNLTACSSYP 1080 FATSHIPEMK LQNLSDQDEL KIPSDLISHC VATLLMIQKC TERQFPPGDV AEVLDSAVTS 1140 LKPCCSQNLP IYTEIQKCMG IIRNQILALV PT

Sequence ? help Back to Top

Protein Sequence Length: 1172 aa Download sequence Send to blast

MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGKRKRKL SDMLGPQWTK EELECFYEAY  60
RKYGKDWKKV ATMIRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYSVMGGSD  120
SEQESNEGMG VSRKPQKRSR GKIRDQPSKS SDKPLPDLLQ FPSANSSCLS LLKRRRSESR  180
PRAVGKRTPR VPISFSHDKN KGERYFSPIR QGMKLKVDAV DDDVAHEVAL ALTEASQRGG  240
SPQVSRTPNR KAETPSSVIN SERMNADSET TSAKIHGSEV DEDACELSLG STEADNADYA  300
KDKNYSRNIE GTGTVEVQQK GKRYYRRKPE IEESVNHLED TKEACSGTEE GQQLCDFKGK  360
FDCEVEDAKT SRASIKGPRK RSKKVLFEGV EDTAFDALQT LADLSLMMPE TADTESSVQH  420
KEEKNEVDKT KLKGNHLVPG AKGSASKTSR HGKHFGHDVR AIPEAKEAHP ANVGMRKMRQ  480
KSSPYKIPKD ETDADSQLGE SPNIEASGEV KNLLSKGKQS NNFVHPKQGK FVRPPEHASS  540
STDQGRDLNN SAPSTIQVSS VNQVNLPTKI RSKRKTDVRK PAIRKGIKSS DNIVKGKISG  600
PVTLFHDGAL DLKEKLCNFL CSYQARRWCA FEWFYSTIDY PWFAKREFVE YLDHVGLGHI  660
PRLTRVEWGV IRSSLGKPRR FSVQFLKEER EKLNQYRESV RRHYAELHAG IGEGLPTDLA  720
RPLSVGQPVI AVHPKTREIH DGSVLTVDYS RYRIQFDSPE LGVEFVMDVD CMPLNPMENL  780
PASLSRQNAA IRKFVENYNE LKMNGQSKES KMEENIKFMQ CDNLENANSP SHTSPSTFSV  840
GNLSQLVKVD SSSPNLQLKI GPTETVYTQQ AINSQPSAVS LVQAREADVE ALSQLTRALD  900
KKEAIVSELR RMNDEVLENQ KGGDNYIKDS DSFKKQYAAV LLQLNEINEQ VSSALLCLRQ  960
RNTYQGTSSG KPLKPSGKIG EQGSQLSSFE SMHHVQESVS HVAEIVESSR RKARSMVDAA  1020
LQAMSSLRKG GKNIERIEDA IDFVNNQLSL NEFSAPAPRS AAPVDSVRSH DNLTACSSYP  1080
FATSHIPEMK LQNLSDQDEL KIPSDLISHC VATLLMIQKC TERQFPPGDV AEVLDSAVTS  1140
LKPCCSQNLP IYTEIQKCMG IIRNQILALV PT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641988.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X2
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1U8MMR3	0.0	A0A1U8MMR3_GOSHI; protein ALWAYS EARLY 3 isoform X2
STRING	Gorai.005G058900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]