PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04922_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 548aa    MW: 61352.4 Da    PI: 6.4239
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04922_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.95.8e-1261785481374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l+e+L++c +a+ ++d++++  l+  l++++s +g+p+qRl ay++e+L+arl +s+s++ykal+++e +   sse ++++++
  Cotton_A_04922_BGI-A2_v1.0 178 LKEVLIACGQALYDNDMSRVAGLMHVLEKMVSVSGEPLQRLGAYVLEGLRARLESSGSNIYKALKCQEPT---SSELMSYMHI 257
                                 5789*****************************************************************9...99******** PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 ++ ++P++kf++  aN  I e +e e+r+HiiDf+i qG+QW+ L+ aL++Rp+gpp +R+Tg+++++s+  +   l+ +g++
  Cotton_A_04922_BGI-A2_v1.0 258 LFRICPYYKFAYTSANAVIKEVMEYEQRIHIIDFQIAQGTQWMYLIAALSKRPGGPPFIRVTGIDDSQSNhaRGGGLSIVGQK 340
                                 ******************************************************************9988889999******* PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L++fA++ +vpfef+  ++ +++++++++L++ pgEalaVn+ + lh+++desv+++++rd++L+lvkslsPkvv++veqe++
  Cotton_A_04922_BGI-A2_v1.0 341 LSEFAKSYNVPFEFHD-TSVSTSEIQVQNLNICPGEALAVNFPYVLHHMPDESVTISNHRDRLLRLVKSLSPKVVTLVEQESN 422
                                 ****************.899*************************************************************** PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +n+++F+ r +e+l+yy+a+f+s+++  pr++++ri+ E+++++r+ivn++aceg+er+erhe l+kWr+r+++aGF+p+pls
  Cotton_A_04922_BGI-A2_v1.0 423 TNTSPFFSRYIETLDYYTAMFESIDVACPRDDKQRISAEQHCVARDIVNMIACEGQERVERHELLGKWRSRFMMAGFSPYPLS 505
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 + ++  ++ +l++++++ yr+ e++gsl+lgW +r++ + SaWr
  Cotton_A_04922_BGI-A2_v1.0 506 SLVTLAVRDMLKEYNNN-YRLVEREGSLYLGWINRAMATSSAWR 548
                                 ***************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.956152529IPR005202Transcription factor GRAS
PfamPF035142.0E-123178548IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MQTSQKHQTR VNIHRLYHQP AKDVDQFCLP HIQILENNAC SDVGSQGPSV SYQAYKDQIF  60
TLESSTATAS FVAYDSPSAI SVSSSRSPFS PQGSQSWMSD PHHSPDNTHG SPFSGSSVVD  120
DSNGLKHKLR ELEVSLLGPE SDIIDSCNCC FTSGAHQAAS MAGLNHEQLV DMIPRLDLKE  180
VLIACGQALY DNDMSRVAGL MHVLEKMVSV SGEPLQRLGA YVLEGLRARL ESSGSNIYKA  240
LKCQEPTSSE LMSYMHILFR ICPYYKFAYT SANAVIKEVM EYEQRIHIID FQIAQGTQWM  300
YLIAALSKRP GGPPFIRVTG IDDSQSNHAR GGGLSIVGQK LSEFAKSYNV PFEFHDTSVS  360
TSEIQVQNLN ICPGEALAVN FPYVLHHMPD ESVTISNHRD RLLRLVKSLS PKVVTLVEQE  420
SNTNTSPFFS RYIETLDYYT AMFESIDVAC PRDDKQRISA EQHCVARDIV NMIACEGQER  480
VERHELLGKW RSRFMMAGFS PYPLSSLVTL AVRDMLKEYN NNYRLVEREG SLYLGWINRA  540
MATSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-541825488375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638588.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2P5X8F20.0A0A2P5X8F2_GOSBA; Uncharacterized protein
STRINGGorai.010G249400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13