PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04939_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 201aa MW: 23377.4 Da PI: 4.7025

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04939_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	85.9	8e-27	16	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 ppG+rF+Ptd el+++yL kkv+g++l+ ++i+e++iy ePw+ ++++++ y F+k +k + +gk+ r++ g Cotton_A_04939_BGI-A2_v1.0 16 PPGYRFEPTDIELLQDYLWKKVNGDPLPY-NIISECEIYGNqdkEPWNVF--IETSTETFYVFTKLKK-KGKGKNIDRVAGCG 94 9**************************.89*996444496..5565566677777655.578******* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wk + + +++ ++ ++g +k +v+ + +++g+k +W+mhe++l Cotton_A_04939_BGI-A2_v1.0 95 TWKGQKT-DPIMY-EKMKIGNRKLFVYEVKGSNEGVKGHWIMHEFSL 139 8865.67887.7899*******9999***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-32	6	158	IPR003441	NAC domain
PROSITE profile	PS51005	29.949	15	158	IPR003441	NAC domain
Pfam	PF02365	1.3E-17	16	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEFDSYEYQF LMTGIPPGYR FEPTDIELLQ DYLWKKVNGD PLPYNIISEC EIYGNQDKEP 60 WNVFIETSTE TFYVFTKLKK KGKGKNIDRV AGCGTWKGQK TDPIMYEKMK IGNRKLFVYE 120 VKGSNEGVKG HWIMHEFSLV DEEDKQIGDY VVCSIRNKNA KDDTDDEEPP MKKTRFNLED 180 HNPPETTSSA CPLQTLLSDW S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-20	15	160	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-20	15	160	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-20	15	160	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-20	15	160	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-20	15	160	20	170	NAC domain-containing protein 19
3swm_B	1e-20	15	160	20	170	NAC domain-containing protein 19
3swm_C	1e-20	15	160	20	170	NAC domain-containing protein 19
3swm_D	1e-20	15	160	20	170	NAC domain-containing protein 19
3swp_A	1e-20	15	160	20	170	NAC domain-containing protein 19
3swp_B	1e-20	15	160	20	170	NAC domain-containing protein 19
3swp_C	1e-20	15	160	20	170	NAC domain-containing protein 19
3swp_D	1e-20	15	160	20	170	NAC domain-containing protein 19
4dul_A	1e-20	15	160	17	167	NAC domain-containing protein 19
4dul_B	1e-20	15	160	17	167	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017639771.1	1e-149	PREDICTED: NAC domain-containing protein 41-like
TrEMBL	A0A1U8PNM9	1e-146	A0A1U8PNM9_GOSHI; NAC domain-containing protein 41-like
STRING	Gorai.010G251100.1	1e-125	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13343	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	8e-22	NAC domain containing protein 47