PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04996_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 812aa    MW: 89737.2 Da    PI: 6.2624
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04996_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.9e-07227246525
                                 --SGGGGTS--TTTTT-SS-S CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                 +C+ffar G+C  G++C+F H
  Cotton_A_04996_BGI-A2_v1.0 227 ICDFFAR-GWCIKGSSCRFLH 246
                                 6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.089222249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6222246IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5227246IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MSSSTSAAVP RAGNDDEIRA ASIMEREINS SDMEIDDDEE NEEDLQSSSN RNDAGNVVES  60
RGHDGQLGSD LSSTPGNCEP RIPAKTLNVG EGSANFEFSL CTNYVGSKYS VSGKEPAKEN  120
GIQEYIGNGK DSRNMLERKA SQDYPDQHTN GKGHFVVDES NSLPVGYHSG GVNNDLGFEE  180
KNKQMDVQTD DDKRKIKSRF HRSAAPQTSA GSLSPSSNSE NKRPALICDF FARGWCIKGS  240
SCRFLHIKDG GKNPGQLPEE DTAAADGKRA VELDEGFRSA AERSRSPASA DALPSSVVNK  300
TGLSSLFFSE RILPLGHDEN QRLHLFHEMN KFPLLQSKDK SLGTAPASQW FSASTDDFGP  360
SKDVRQNGIG QNLPVSLSDR STFGNGFLPE YKSSLSGSVT SLGDIYSENQ SHHVSTHLVS  420
LPLNFSLSAC SLGAQKMLDS DRGRHPSKLS SLLQGPFPFS SSKPEKFLVN DIASDPLHFP  480
ENRIKISSDD WEPSVPFRPS FFVTSGISSP RSEYDPLRDS IDVSNAGERP LKFSFSNQGP  540
SLLNVADPPT YGNSASRRPL LPECNDDKRT ASCHNGDHEN LVNNNCNPSG KDSLTTDAND  600
GTSAVDMQNG TLVKEEISSV ASHVKDISKA NKNDRDHDGR HRRGRSRCKK DLEVDRAREK  660
NEIDVEVEHK ADGDYKESKA MRHFHAALVD LIKELLKPTW REGHLSKDAH NTIVKKAVDK  720
VFGSIQPHQL PVTFESVKQY LSSSQPKITR LVEVRIFDLR CIVYSMQDLD NKCYQPPSSN  780
QRYFLLPYEY CLFCLSIRWS NIYSLYILNV TH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5825134e-38JX582513.1 Gossypium hirsutum clone NBRI_GE15352 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639310.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
TrEMBLA0A2P5XD900.0A0A2P5XD90_GOSBA; Uncharacterized protein
STRINGGorai.010G256500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156171016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-45C3H family protein