PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05001_BGI-A2_v1.0

Common Name

F383_00242

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1728aa MW: 195351 Da PI: 5.1555

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05001_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.2e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgLt+rq ++WF+ rR kekk Cotton_A_05001_BGI-A2_v1.0 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLTDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-19	14	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-17	18	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.617	25	85	IPR001356	Homeobox domain
SMART	SM00389	5.5E-18	27	89	IPR001356	Homeobox domain
Pfam	PF00046	8.1E-17	29	84	IPR001356	Homeobox domain
CDD	cd00086	1.36E-14	30	84	No hit	No description
SMART	SM00571	7.5E-20	538	597	IPR018501	DDT domain
PROSITE profile	PS50827	16.346	538	597	IPR018501	DDT domain
Pfam	PF02791	1.1E-15	539	594	IPR018501	DDT domain
Pfam	PF05066	1.5E-14	720	787	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.9E-8	939	983	IPR028942	WHIM1 domain
Pfam	PF15613	3.2E-12	1106	1178	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1728 aa Download sequence Send to blast
MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLTDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS 120 GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GMEFDPLPPD AFGAIPEPHN RPGHPYESKV YERNDGRSSK VAARAFHEYQ FLPEHSSLRS 240 DAYGLVTQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ GHGSRARVLP QQGIIPSSSH 300 VADDSLAERN SFTNGRNAPS ICHPVLGSED SYMLSAEQSL NNDADPRIDR KRKSDETRIA 360 KEVEAHENRI RKELEKLDHK RRKSEERMRK EMERLERERR KEEERLMREK QREEERTQRE 420 QKREMERRQK FLQKEYLRAE KKRQKEELRR EREEERRRVA REKATARKIA KESMDLLEDE 480 QLELMELAAA RKGIYSIIHL EHDTLQNLES FRDSLSVFPP KSVQLKGPFD IQPWIDSEEN 540 VGNLLMAWRF LITFADILRL WPFTLDEFVQ AFHDYDSRLL GEIHVAILRS IIKDIEDVAR 600 TPATGLGMNQ YCAANPEGGH LQIVEGAYSW GFDIRNWQHH LNPLTWPEIF RQLAISAGFG 660 PQLKKQNATW TYTGDNDEGK GCADVVSTLR NGSAAGNAFA LMREKGLLLP RRSRHRLTPG 720 TVKFAAFHVL SLEGSKGLTV LELADKIQKS GLRDLTTSKT PEASISVALT RDGKLFERIA 780 PSTYCVRPAY RKDPADAEAI LATARRKIRQ FENGFLGGED ADEVERDEVE RDDVERDEDS 840 ECDVDEDPEV DDIATPSNVN KDADYPKNEV NTCLGSKNFH ASADDELDVP AEFDKDFPPF 900 PSNTVKVDND PSNTGQYVAS EENGTGNPDQ QNIEIDESES GESWIQGLSE GEYSHLSVEE 960 RLNALVALIG IANEGNSIRA VLELDKSRLK EECIIKMDFP PVMGIKTEAQ LPNSAVEGSR 1020 SPFPVADNKN DEASPSIPED QKPLLCSQNV QNDLNSYPAE RALVLQDASM GPENFCAQQH 1080 GYASKRSRSQ LKSYIAHRAE EMYVYRSLPL GQDRRRNRYW QFVASASKND PCSGQIFVEL 1140 HDRKWRLIDS EEAFDALLAS LDARGIRESH LRIMLRKIES SFKENVRRNL HSARAMGRSG 1200 NSSENEASEI DSGPDFSGSF DSPRNGICGL NSDASETLPC FKIQLGRNEN ERKSAMKRYQ 1260 DFQRWMWNEC YNSSTLCAMK YEKKRCTQLL AVCDTCLGSH MPEDVHCSYC HQTFRAFNNN 1320 FNFYDHEIRC KENRKLDNKD KHTLDSSLPM GINLLKSFCA LVEVSIPPEA LDSMWVEGQR 1380 KMWGRKLNAS SSADELLKLL TQLESAIKRD YLSSNFETTK ELLGSSLQSE NDSSTVSVLP 1440 WIPQTTPAVA LRLLELDSSI MYVKPEKVEP PENREARASY IKLPSRTSLF IKNKELGLKE 1500 LDQDEPMKEN FTDLSNSKRS SYKRGRGARE QGSGRKWQRK GSGSKSDAGK QSVRENNNLS 1560 FQLKQQSQRT GQSSGHGRRT VRKRAESRAA NSTTMARMSN VVKPKADAIS VRDLDEEWRA 1620 ERFGMMATVN PPDSNSTEEE SDDDGQGEGY GQGNWELDLN GASNGWSREP MEASYEEDDA 1680 YEDDNGIEQV VEEESDGDLE MSDASDDVPN ETRNDDVLDS ADSEDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1728 aa Download sequence Send to blast

MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL  60
SEKLGLTDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS  120
GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GMEFDPLPPD AFGAIPEPHN RPGHPYESKV YERNDGRSSK VAARAFHEYQ FLPEHSSLRS  240
DAYGLVTQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ GHGSRARVLP QQGIIPSSSH  300
VADDSLAERN SFTNGRNAPS ICHPVLGSED SYMLSAEQSL NNDADPRIDR KRKSDETRIA  360
KEVEAHENRI RKELEKLDHK RRKSEERMRK EMERLERERR KEEERLMREK QREEERTQRE  420
QKREMERRQK FLQKEYLRAE KKRQKEELRR EREEERRRVA REKATARKIA KESMDLLEDE  480
QLELMELAAA RKGIYSIIHL EHDTLQNLES FRDSLSVFPP KSVQLKGPFD IQPWIDSEEN  540
VGNLLMAWRF LITFADILRL WPFTLDEFVQ AFHDYDSRLL GEIHVAILRS IIKDIEDVAR  600
TPATGLGMNQ YCAANPEGGH LQIVEGAYSW GFDIRNWQHH LNPLTWPEIF RQLAISAGFG  660
PQLKKQNATW TYTGDNDEGK GCADVVSTLR NGSAAGNAFA LMREKGLLLP RRSRHRLTPG  720
TVKFAAFHVL SLEGSKGLTV LELADKIQKS GLRDLTTSKT PEASISVALT RDGKLFERIA  780
PSTYCVRPAY RKDPADAEAI LATARRKIRQ FENGFLGGED ADEVERDEVE RDDVERDEDS  840
ECDVDEDPEV DDIATPSNVN KDADYPKNEV NTCLGSKNFH ASADDELDVP AEFDKDFPPF  900
PSNTVKVDND PSNTGQYVAS EENGTGNPDQ QNIEIDESES GESWIQGLSE GEYSHLSVEE  960
RLNALVALIG IANEGNSIRA VLELDKSRLK EECIIKMDFP PVMGIKTEAQ LPNSAVEGSR  1020
SPFPVADNKN DEASPSIPED QKPLLCSQNV QNDLNSYPAE RALVLQDASM GPENFCAQQH  1080
GYASKRSRSQ LKSYIAHRAE EMYVYRSLPL GQDRRRNRYW QFVASASKND PCSGQIFVEL  1140
HDRKWRLIDS EEAFDALLAS LDARGIRESH LRIMLRKIES SFKENVRRNL HSARAMGRSG  1200
NSSENEASEI DSGPDFSGSF DSPRNGICGL NSDASETLPC FKIQLGRNEN ERKSAMKRYQ  1260
DFQRWMWNEC YNSSTLCAMK YEKKRCTQLL AVCDTCLGSH MPEDVHCSYC HQTFRAFNNN  1320
FNFYDHEIRC KENRKLDNKD KHTLDSSLPM GINLLKSFCA LVEVSIPPEA LDSMWVEGQR  1380
KMWGRKLNAS SSADELLKLL TQLESAIKRD YLSSNFETTK ELLGSSLQSE NDSSTVSVLP  1440
WIPQTTPAVA LRLLELDSSI MYVKPEKVEP PENREARASY IKLPSRTSLF IKNKELGLKE  1500
LDQDEPMKEN FTDLSNSKRS SYKRGRGARE QGSGRKWQRK GSGSKSDAGK QSVRENNNLS  1560
FQLKQQSQRT GQSSGHGRRT VRKRAESRAA NSTTMARMSN VVKPKADAIS VRDLDEEWRA  1620
ERFGMMATVN PPDSNSTEEE SDDDGQGEGY GQGNWELDLN GASNGWSREP MEASYEEDDA  1680
YEDDNGIEQV VEEESDGDLE MSDASDDVPN ETRNDDVLDS ADSEDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	379	400	KRRKSEERMRKEMERLERERRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-103	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641596.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0B0NWU2	0.0	A0A0B0NWU2_GOSAR; Homeobox aristaless
STRING	Gorai.010G243500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1