PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05099_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 226aa    MW: 26119.4 Da    PI: 5.8512
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05099_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.99.8e-3741342128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 
                                  +GfrFhPtdeel+ eyL+ k+ +++  + +vi+e+ di+++ePw+Lp +  ++++++ wyf  + + ky+++k  +r+t +g
  Cotton_A_05099_BGI-A2_v1.0   4 VKGFRFHPTDEELI-EYLQIKTFNRDSLV-QVIAEIpDICESEPWELPgRsVLQTGDRLWYFMYPPKYKYRNSKLVSRTTLEG 84 
                                 68************.9******9999666.89****************6347788999************************* PP

                         NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                                 yWk tgk ++++++ +g ++g kktL fykg  +++  ++t Wvmhey+l
  Cotton_A_05099_BGI-A2_v1.0  85 YWKITGKARKIINSeTGMEIGNKKTLLFYKGqcNDKIKNNTCWVMHEYEL 134
                                 **********999867888**********9833444456899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-352135IPR003441NAC domain
PROSITE profilePS5100536.2693150IPR003441NAC domain
PfamPF023653.1E-205134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNMVKGFRFH PTDEELIEYL QIKTFNRDSL VQVIAEIPDI CESEPWELPG RSVLQTGDRL  60
WYFMYPPKYK YRNSKLVSRT TLEGYWKITG KARKIINSET GMEIGNKKTL LFYKGQCNDK  120
IKNNTCWVMH EYELKAMLDS TNSHQDILDP NGSSEPEASN NHNDVHNHCS SVDTYGDERS  180
NQHNTVDEGE GSNISTNFVN HVAEDAIPEV RCGNRLSMWM MLKMTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-26113413140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016727770.11e-156PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X3
RefseqXP_017625185.11e-156PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X3
TrEMBLA0A1U8MLS91e-155A0A1U8MLS9_GOSHI; protein CUP-SHAPED COTYLEDON 3-like isoform X3
STRINGGorai.004G227000.11e-141(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2437734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.28e-36TCV-interacting protein