PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05107_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 56aa MW: 6789.94 Da PI: 10.9435

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05107_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24	8.3e-08	1	36	12	47
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +N+ A rsR+RKk++++ L+ k+ Le++ ++L Cotton_A_05107_BGI-A2_v1.0 1 RNKNATMRSRERKKMYVKDLKMKSRYLEGKCRRLSH 36 8****************************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57959	4.75E-8	1	49	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.9E-8	1	49	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 56 aa Download sequence Send to blast
RNKNATMRSR ERKKMYVKDL KMKSRYLEGK CRRLSHDFQC FIAENQALQI FFSSSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468773.1	1e-22	PREDICTED: uncharacterized protein LOC105786840
Swissprot	Q69XV0	1e-15	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	A0A2P5QM41	8e-24	A0A2P5QM41_GOSBA; Uncharacterized protein
STRING	Gorai.006G220700.1	2e-24	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4634	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	7e-13	basic region/leucine zipper motif 60

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]