PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05207_BGI-A2_v1.0
Common NameF383_02746
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 317aa    MW: 34603.2 Da    PI: 6.4336
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05207_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.6e-17212246135
                        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                 C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Cotton_A_05207_BGI-A2_v1.0 212 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 246
                                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.1E-7723300IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.215206242IPR000679Zinc finger, GATA-type
SMARTSM004018.4E-16206256IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-13208243IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.42E-14208269No hitNo description
CDDcd002022.24E-13211258No hitNo description
PROSITE patternPS003440212237IPR000679Zinc finger, GATA-type
PfamPF003201.1E-14212246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEMGDFFVGG YYGGGAAGDF SPEKRMSMVE EKLGENFIVD DLLDFSNEDA VIGDGLVFDN  60
VAGNSTDLST VTCNSSVSGG ENHFSSANFT HSSQFSGELG VPYDELAELE WLSNFVEDSF  120
STVPNLQSNH QIFALPTPES SSSSTRSDSL PRSSTDPIFK HGAPLPGKAR SKRSMNAPCD  180
WSTRVLHLNP KPTGHKNRDN PNGNSEYSGR KCLHCASEKT PQWRTGPMGP KTLCNACGVR  240
YKSGRLVPEY RPAASPTFVS TEHSNSHRKV LEIRRQKDMQ RGGQGTRFLS QTSVFPISNG  300
GDVVDDFLIH HNGGPRF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614285.10.0PREDICTED: GATA transcription factor 4-like
TrEMBLA0A0B0N4U30.0A0A0B0N4U3_GOSAR; GATA transcription factor
STRINGGorai.010G230500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-71GATA transcription factor 9