PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05272_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 194aa MW: 22581.9 Da PI: 7.628

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05272_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.8	2.6e-50	23	157	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknra 77 l pGfrFhPtdeelv +yLk+kve+k +++ + ik+vdiyk++PwdLp+ + + +ekewyfF+kr +ky+++ r+nr+ Cotton_A_05272_BGI-A2_v1.0 23 LLPGFRFHPTDEELVGFYLKRKVEKKLFTI-DLIKHVDIYKFDPWDLPRvskvS--StvGEKEWYFFCKRGRKYKNSIRPNRV 102 579**********************999.99**********9545443..244889***************** PP NAM 78 tksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 t sg+Wkatg dk+++ +++ +glkk+Lv+ykg+a kg+ktdW+mhe+rl Cotton_A_05272_BGI-A2_v1.0 103 TVSGFWKATGIDKPIYGVgeyhNNSIIGLKKSLVYYKGSAGKGTKTDWMMHEFRL 157 ************9877777778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-52	22	164	IPR003441	NAC domain
PROSITE profile	PS51005	49.646	23	184	IPR003441	NAC domain
Pfam	PF02365	6.0E-26	25	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEDVEMEKIV SCNTEEEEEE DILLPGFRFH PTDEELVGFY LKRKVEKKLF TIDLIKHVDI 60 YKFDPWDLPR VSKVSSTVGE KEWYFFCKRG RKYKNSIRPN RVTVSGFWKA TGIDKPIYGV 120 GEYHNNSIIG LKKSLVYYKG SAGKGTKTDW MMHEFRLPLD QNHAKDNFEE AILIISALCD 180 TIPRTIHSSS VTHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-46	16	157	8	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017614396.1	1e-124	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	2e-72	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1U8PLL4	1e-115	A0A1U8PLL4_GOSHI; transcription factor JUNGBRUNNEN 1-like isoform X2
TrEMBL	A0A1U8PPC0	1e-114	A0A1U8PPC0_GOSHI; transcription factor JUNGBRUNNEN 1-like isoform X1
STRING	Gorai.010G236700.1	1e-114	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	1e-72	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]