PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05427_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 250aa MW: 27067.5 Da PI: 8.4786

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05427_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.4	4.3e-40	17	77	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdstntkfCyynny+l+qPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s Cotton_A_05427_BGI-A2_v1.0 17 EQEQLKCPRCDSTNTKFCYYNNYNLAQPRHFCKSCRRYWTKGGALRNIPVGGGTRKNSKRS 77 57899****************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-28	13	72	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-33	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.357	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MHDPTDFQQM KAPVFPEQEQ LKCPRCDSTN TKFCYYNNYN LAQPRHFCKS CRRYWTKGGA 60 LRNIPVGGGT RKNSKRSSSS DSSSQPKRQS NPAPDSIRNQ NLSDSSPPPT IPQQVLLSSA 120 VQNSVSDADQ TRMYVLSLDH QARKMTDTGG SFSSLLASSG QFRNLLNGLN PNGSGSETAH 180 TDDFGGNLAS GRGIGPSSDR DPRLRESNNS NNESYFGVQG GGGGGDTNCW TGCSNGWPDL 240 AIYTPGSSFH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605474.1	0.0	PREDICTED: dof zinc finger protein DOF3.1
TrEMBL	A0A2P5WRM8	1e-166	A0A2P5WRM8_GOSBA; Uncharacterized protein
STRING	Gorai.009G139800.1	1e-163	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-38	DOF zinc finger protein 1