PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05503_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 201aa MW: 21588.1 Da PI: 4.2504

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05503_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	176	197	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg+sF + L++H + H Cotton_A_05503_BGI-A2_v1.0 176 CKSCGRSFGSENALQSHSKAkH 197 *****************88777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.43E-5	167	196	No hit	No description
PROSITE profile	PS50157	10.887	174	197	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	176	197	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEFWGSESEE ELLEPIVNPV KPHSTASDPT TSEQIKIVEP KKAEDSSDDE DEDDTSTEDE 60 MSSEDQEPGM LVNGENESNN DTDSDEDDSE EESSDEDPET PEMEKAGPSK KRSAESATKT 120 PAPEKKAKLV TPQKTDGKKV GGHTATPHPS KQARKALITT GQVNQSPKPG GSSFLCKSCG 180 RSFGSENALQ SHSKAKHGTA V

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017630739.1	1e-136	PREDICTED: histone deacetylase HDT1-like isoform X1
Refseq	XP_017630740.1	1e-136	PREDICTED: histone deacetylase HDT1-like isoform X2
TrEMBL	A0A0D2SQN2	2e-90	A0A0D2SQN2_GOSRA; Uncharacterized protein
STRING	Gorai.007G371300.1	4e-90	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2027	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	1e-16	histone deacetylase 2C