PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05511_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 223aa MW: 25385.2 Da PI: 5.6213

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05511_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.4	1.9e-21	85	145	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +e+ + +ps+++++e+A++l +++e++V++WFqNrRa+ k+ Cotton_A_05511_BGI-A2_v1.0 85 RQRWTPTPLQLQILENIYEQgTGTPSKQKIKEIASELaqhgRISETNVYNWFQNRRARSKR 145 89***************99************************************97 PP
2	Wus_type_Homeobox	101.4	6.4e-33	84	146	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RWtPtp Q++iLe++y++G+ tP+k++i++i++eL+++G+i+++NV++WFQNr+aR+++k Cotton_A_05511_BGI-A2_v1.0 84 ARQRWTPTPLQLQILENIYEQGTGTPSKQKIKEIASELAQHGRISETNVYNWFQNRRARSKRK 146 789**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.771	81	146	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-17	81	148	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-13	83	150	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-19	84	149	IPR009057	Homeodomain-like
CDD	cd00086	1.15E-14	85	146	No hit	No description
Pfam	PF00046	3.7E-19	85	145	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MEWENQHGEE EYLQYQIQNG VCGKVMSDEQ VEELKKQIVA YSTISEQLAE LHKSMSAHHD 60 FTGIRFGNLY SDPISASVGH KITARQRWTP TPLQLQILEN IYEQGTGTPS KQKIKEIASE 120 LAQHGRISET NVYNWFQNRR ARSKRKFQVS TGSVNAEFEP DVSTKDKKTK PVGLDFIDNF 180 SHGVESFYFQ GSESGIDQLI GKEESSRGYD PYNNLVEQFG LLG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017629879.1	1e-167	PREDICTED: WUSCHEL-related homeobox 13-like
Swissprot	Q5QMM3	1e-60	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0D2TSM6	1e-154	A0A0D2TSM6_GOSRA; Uncharacterized protein
STRING	Gorai.007G372000.1	1e-154	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17223	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-62	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]