PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05526_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 531aa MW: 60654.6 Da PI: 7.6004

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05526_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.8	2.5e-08	352	399	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++++G g+W+ I + + Rt+ +++++w+++l Cotton_A_05526_BGI-A2_v1.0 352 WTLAEVIKLVDGIAKYGVGRWTDIKKLLFassAYRTPVDLRDKWRNLL 399 ******************************99**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.751	344	403	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-12	344	406	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-9	348	401	IPR001005	SANT/Myb domain
CDD	cd11660	4.45E-18	350	400	No hit	No description
Pfam	PF00249	5.5E-7	351	399	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.2E-15	351	409	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
METDRKSHSM KKLNDVKCQR VDQPVVPGLD DEVTEVEHLL AEPKIEHISV DGILCFGNEN 60 IEKHLKMEDF SCAFDYGWKI SAGGLDSIRG RGGDDLKLEV LDGLLDEVDE VDDIDAAHDL 120 SGACEDFLLD IEFPEKLSEL DCGPREGSTL CNSSSESHSP GFSGRSNSVG GISESSTETV 180 RESNSENGGL GKRVGCDLHH NFRRKHGCQG PVMDVGRSSI EHMQDLDESD DDEKPLVSLI 240 LSNQKVKSSV KVTKGDTLLR QKRLRKPTRR YIEEFSRNSN MEESKSHKIQ PQEEFPQVPS 300 ESQPWRGRPK KIVLKSELES DYELSASESE DGRKRTKRSK TACDRRKHQK MWTLAEVIKL 360 VDGIAKYGVG RWTDIKKLLF ASSAYRTPVD LRDKWRNLLR SSSAQENNRR EVSFRVFLHF 420 YFHLLFQLNP NVHCRLRIIR SMPYVPYQSP WYVASVNWQP FIHTRKFHLS IMFLHPNNRQ 480 LKVLQFTTVH ETYVGSKRSL KKAFCVNSSL ACNSPFNTDL HILMLFRSLG N

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

METDRKSHSM KKLNDVKCQR VDQPVVPGLD DEVTEVEHLL AEPKIEHISV DGILCFGNEN  60
IEKHLKMEDF SCAFDYGWKI SAGGLDSIRG RGGDDLKLEV LDGLLDEVDE VDDIDAAHDL  120
SGACEDFLLD IEFPEKLSEL DCGPREGSTL CNSSSESHSP GFSGRSNSVG GISESSTETV  180
RESNSENGGL GKRVGCDLHH NFRRKHGCQG PVMDVGRSSI EHMQDLDESD DDEKPLVSLI  240
LSNQKVKSSV KVTKGDTLLR QKRLRKPTRR YIEEFSRNSN MEESKSHKIQ PQEEFPQVPS  300
ESQPWRGRPK KIVLKSELES DYELSASESE DGRKRTKRSK TACDRRKHQK MWTLAEVIKL  360
VDGIAKYGVG RWTDIKKLLF ASSAYRTPVD LRDKWRNLLR SSSAQENNRR EVSFRVFLHF  420
YFHLLFQLNP NVHCRLRIIR SMPYVPYQSP WYVASVNWQP FIHTRKFHLS IMFLHPNNRQ  480
LKVLQFTTVH ETYVGSKRSL KKAFCVNSSL ACNSPFNTDL HILMLFRSLG N

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017627373.1	0.0	PREDICTED: uncharacterized protein LOC108470536
TrEMBL	A0A0D2SWV6	0.0	A0A0D2SWV6_GOSRA; Uncharacterized protein
STRING	Gorai.007G373500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9200	19	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	4e-22	TRF-like 6