PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05536_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 183aa    MW: 20902.4 Da    PI: 10.2277
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05536_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB131.72.4e-4126108195
                       NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83 
                                 vreqdrflPian+srimkk+lPan+ki+kdaketvq            easdkcqrekrktingddllwa+atlGfedy++pl
  Cotton_A_05536_BGI-A2_v1.0  26 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQ------------EASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL 96 
                                 69********************************98............69********************************* PP

                       NF-YB  84 kvylkkyreleg 95 
                                 k+yl++yre+e 
  Cotton_A_05536_BGI-A2_v1.0  97 KIYLSRYREMEV 108
                                 **********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.4E-3720108IPR009072Histone-fold
SuperFamilySSF471137.62E-2929108IPR009072Histone-fold
PfamPF008081.9E-93263IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.7E-106785No hitNo description
PRINTSPR006153.7E-1086104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAEAPAPASP GGGSHESGEQ SPKSNVREQD RFLPIANISR IMKKALPANG KIAKDAKETV  60
QEASDKCQRE KRKTINGDDL LWAMATLGFE DYIDPLKIYL SRYREMEVSY RYLQFVLQLV  120
FHLYSPSYLF DMALFANVRV MLRARLKVET RLLRRMSNQA QMASLFIKVH SHKVLIMGIL  180
KPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-3426105192Transcription factor HapC (Eurofung)
4g92_B2e-3426105192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2322734e-41KR232273.1 Vernicia fordii nuclear transcription factor Y subunit B-5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627566.15e-71PREDICTED: nuclear transcription factor Y subunit B-8
RefseqXP_017627567.15e-71PREDICTED: nuclear transcription factor Y subunit B-8
SwissprotQ8VYK48e-55NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2H5PJ077e-79A0A2H5PJ07_CITUN; Uncharacterized protein
STRINGGorai.007G374600.19e-69(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.19e-52nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]