PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05632_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 162aa MW: 18828.9 Da PI: 4.8267

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05632_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.5	2e-31	101	159	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YY+C +gCpvkk+ver++edp++v++tYeg Hnh+ Cotton_A_05632_BGI-A2_v1.0 101 LDDGYRWRKYGKKMVKNSPNPRNYYKCLIEGCPVKKRVERDREDPSYVITTYEGIHNHQ 159 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.7E-34	87	160	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-28	94	159	IPR003657	WRKY domain
PROSITE profile	PS50811	30.297	96	161	IPR003657	WRKY domain
SMART	SM00774	2.0E-35	101	160	IPR003657	WRKY domain
Pfam	PF03106	8.4E-25	102	159	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MFNNKFGLPN SPESDCADRT KFELPDAYFD GWLHEGYREA MISGTIENPF NQANEVFDEF 60 ACNGSLLIPA PDDNRESETV GEMSEFKERY AFKTKSEVEI LDDGYRWRKY GKKMVKNSPN 120 PRNYYKCLIE GCPVKKRVER DREDPSYVIT TYEGIHNHQS VS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-27	91	158	7	74	Probable WRKY transcription factor 4
2lex_A	8e-27	91	158	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669805	0.0	KF669805.1 Gossypium hirsutum WRKY transcription factor 114 (WRKY114) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647914.1	1e-120	PREDICTED: probable WRKY transcription factor 50
TrEMBL	A0A068LI92	1e-116	A0A068LI92_GOSHI; WRKY transcription factor 114
STRING	Gorai.001G021500.1	1e-114	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6121	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-43	WRKY DNA-binding protein 50