PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05642_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 319aa    MW: 36202.1 Da    PI: 9.6051
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05642_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-083989148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                                +g+WT+ Ed+ll+ ++k +G g W+  +++ g        +t+   k+rw++yl
  Cotton_A_05642_BGI-A2_v1.0 39 KGAWTALEDKLLASYIKTHGEGKWSDLSKRAGiyiyiyIYKTP---KLRWLNYL 89
                                79*****************************988888855688...88888886 PP
2Myb_DNA-binding50.93.7e-1695140148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Cotton_A_05642_BGI-A2_v1.0  95 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTVL 140
                                 78999*****************.*********.************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.2113489IPR017877Myb-like domain
SuperFamilySSF466897.26E-2337136IPR009057Homeodomain-like
SMARTSM007171.2E-43891IPR001005SANT/Myb domain
PfamPF002494.8E-83989IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-144096IPR009057Homeodomain-like
PROSITE profilePS5129425.11790144IPR017930Myb domain
SMARTSM007177.6E-1694142IPR001005SANT/Myb domain
PfamPF002491.7E-1495140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2497143IPR009057Homeodomain-like
CDDcd001673.68E-1199140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGYKRGKVLF HFNGFKVEGE RHTRDMGRSP SCSKEGLNKG AWTALEDKLL ASYIKTHGEG  60
KWSDLSKRAG IYIYIYIYKT PKLRWLNYLR PDIKRGNISH DEEELIIRLH NLLGNRWSLI  120
AGRLPGRTDN EIKNYWNTVL RKRAKAQASI GTPPSKSTQK MLSTESGVCE PLRSPRATKA  180
KIKVILTKAT RSSSKVRIPT QLPAAQQIDK LRDGQLKSTN NNQEMSGDIA TVEAHNGTQM  240
IDSLYSDGGG SDLLNEQLKE SDVEFEENLM QPLAFDEAMF KNWTVNPCLN GKDAMDFDSL  300
AFLLETDEYG FYRNINFQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-233714425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6027067e-75JX602706.1 Gossypium hirsutum clone NBRI_GE41365 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644867.10.0PREDICTED: transcription factor MYB23-like
TrEMBLA0A346KJX30.0A0A346KJX3_GOSAR; Transcription factor TT2
STRINGGorai.001G020400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2438634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.14e-52myb domain protein 7