PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05643_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 593aa MW: 67037.8 Da PI: 7.0179

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05643_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.5	8.7e-29	409	492	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW+ ev aLi++r ++e+++r+ lk+p We+vs+ m++ g++rs+++Ckekwen+nk+++k ke+ kkr s++s+tc+yfd Cotton_A_05643_BGI-A2_v1.0 409 RWPIAEVEALIQVRCDLESKFREPGLKGPVWEQVSSLMSSFGYQRSAQKCKEKWENINKYFRKSKESGKKR-SQKSKTCSYFD 490 8*******************************************************************8.89999**** PP trihelix 84 ql 85 ql Cotton_A_05643_BGI-A2_v1.0 491 QL 492 *9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	7.52E-24	408	473	No hit	No description
PROSITE profile	PS50090	6.249	409	466	IPR017877	Myb-like domain
Pfam	PF13837	1.9E-20	409	494	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MHPIKYGAHH HHHHHHHLQQ QQFMEDDDAS SSASIFFISN PHNHQQQPVF PYPSQQHNKQ 60 HENPVTHQLF HHQFQPFQHP EPVHHHSQQQ QQPFLAVNFK LGLNENSGKK EAALPLNHQQ 120 NGATFLHGNE QQQQHSLFLP RCLPPQEDFP IKEPFWKPLN RCDDRQCSAD GAKMIEGTKY 180 NKVLQQPGQS TSERSRNLDS KYGLFGELEA IYGLGKRGEA AQAGSGSALT GENSPANVGP 240 SMNLTKFQEH DVVGANGGGG NVVATGVDHG SEASIGKEAS LRKVQKKKRK MKMKEQLSSM 300 VVFFESLVKQ VTDHQECLHK RFLQFIERME KERSVKEESW RQQEAEKHNR EAVARAHEQA 360 LASSREALIV SYLEKITGES INLPGKTPLQ QPGNAMEPFN GVKVDNSIRW PIAEVEALIQ 420 VRCDLESKFR EPGLKGPVWE QVSSLMSSFG YQRSAQKCKE KWENINKYFR KSKESGKKRS 480 QKSKTCSYFD QLGQLYSRIP ITCPTSPTPL INNDIEVQKQ GDSDFLEAYL PERDLVTAQV 540 NISGNLKDSE MNIPKLDFDG IVGENVAEGS KVKYNESHES ELDGDDNDSD KGE

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MHPIKYGAHH HHHHHHHLQQ QQFMEDDDAS SSASIFFISN PHNHQQQPVF PYPSQQHNKQ  60
HENPVTHQLF HHQFQPFQHP EPVHHHSQQQ QQPFLAVNFK LGLNENSGKK EAALPLNHQQ  120
NGATFLHGNE QQQQHSLFLP RCLPPQEDFP IKEPFWKPLN RCDDRQCSAD GAKMIEGTKY  180
NKVLQQPGQS TSERSRNLDS KYGLFGELEA IYGLGKRGEA AQAGSGSALT GENSPANVGP  240
SMNLTKFQEH DVVGANGGGG NVVATGVDHG SEASIGKEAS LRKVQKKKRK MKMKEQLSSM  300
VVFFESLVKQ VTDHQECLHK RFLQFIERME KERSVKEESW RQQEAEKHNR EAVARAHEQA  360
LASSREALIV SYLEKITGES INLPGKTPLQ QPGNAMEPFN GVKVDNSIRW PIAEVEALIQ  420
VRCDLESKFR EPGLKGPVWE QVSSLMSSFG YQRSAQKCKE KWENINKYFR KSKESGKKRS  480
QKSKTCSYFD QLGQLYSRIP ITCPTSPTPL INNDIEVQKQ GDSDFLEAYL PERDLVTAQV  540
NISGNLKDSE MNIPKLDFDG IVGENVAEGS KVKYNESHES ELDGDDNDSD KGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	280	289	LRKVQKKKRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00651	PBM	Transfer from LOC_Os02g01380	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017626150.1	0.0	PREDICTED: trihelix transcription factor GTL1-like
TrEMBL	A0A2P5VT69	0.0	A0A2P5VT69_GOSBA; Uncharacterized protein
STRING	Gorai.001G020300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16469	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	6e-47	Trihelix family protein