PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05740_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 170aa    MW: 20569.8 Da    PI: 9.409
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05740_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.32.8e-31201471128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratks 80 
                                 lp G+rF P+d+el+++yL +k++g +l++ +vik++d y+++P ++     k+  +++e y+F+k+++  ++ +r +r t++
  Cotton_A_05740_BGI-A2_v1.0  20 LPIGYRFVPRDHELISFYLFNKIKGFQLPF-DVIKNIDFYYLDPFHFSpCefKHGRKNNEAYYFTKTKEIRSKMDRIERHTRN 101
                                 699***************************.99**************64423444566799********************** PP

                         NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 gyWk+ gk +e+++ +++ +glk+ +vf+  r p+    +Wvmhe+++
  Cotton_A_05740_BGI-A2_v1.0 102 GYWKSCGKAEEIKH-RDRIIGLKRLFVFH-WRIPELGFGKWVMHEFSI 147
                                 **************.8999**********.78888899********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-3218155IPR003441NAC domain
PROSITE profilePS5100530.48920169IPR003441NAC domain
PfamPF023653.0E-1821147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAEALVSDDS FLDEYENKAL PIGYRFVPRD HELISFYLFN KIKGFQLPFD VIKNIDFYYL  60
DPFHFSPCEF KHGRKNNEAY YFTKTKEIRS KMDRIERHTR NGYWKSCGKA EEIKHRDRII  120
GLKRLFVFHW RIPELGFGKW VMHEFSIHPT FLVPHPLLDE KIKAKVYLYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-182014715140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625880.11e-124PREDICTED: NAC domain-containing protein 45-like
TrEMBLA0A1U8MUF31e-121A0A1U8MUF3_GOSHI; NAC domain-containing protein 45-like
STRINGGorai.004G258200.11e-114(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17601710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.12e-23NAC domain containing protein 45