PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05774_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 441aa    MW: 48238.1 Da    PI: 8.3795
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05774_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-114470127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                ++++ C+++ rtG C++G++C+F+H+p
  Cotton_A_05774_BGI-A2_v1.0 44 PGEPDCSYYIRTGLCRFGATCRFNHPP 70
                                5789*********************97 PP
2zf-CCCH30.28e-10104124727
                                 SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                                 +++++tGtCk+G++CkF+H++
  Cotton_A_05774_BGI-A2_v1.0 104 HYYLKTGTCKFGATCKFHHPR 124
                                 59*****************96 PP
3zf-CCCH36.67.8e-12146170327
                                 S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                 + +C +++rtG+Ck+G++CkF+H++
  Cotton_A_05774_BGI-A2_v1.0 146 ETECAYYLRTGQCKFGSTCKFHHPQ 170
                                 578********************97 PP
4zf-CCCH37.93e-12302328127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++++C+f+++tG Ck+G+ C+F+H++
  Cotton_A_05774_BGI-A2_v1.0 302 PGQPECQFYMKTGDCKFGAVCRFHHPR 328
                                 5789*********************96 PP
5zf-CCCH41.71.9e-13348374127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++++lC+f++r+G+Ck+G++CkF+H++
  Cotton_A_05774_BGI-A2_v1.0 348 PGEPLCDFYSRYGICKFGSSCKFNHPM 374
                                 589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5874371IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-54370IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-84570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-54871IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-44969IPR000571Zinc finger, CCCH-type
SMARTSM003560.34101124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.681104125IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7104124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4105125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338143171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6143171IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5143170IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4149169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596301329IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6301328IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-9303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5305330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4307329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906347375IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7347374IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-11349374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5350374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4352372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
IASAVAVAVT EGTSLSPSLN QDVMWQMNLR SSETMESGYY PERPGEPDCS YYIRTGLCRF  60
GATCRFNHPP NRKLAIAAAR MKGEFPERVG QPECQACTYS LFSHYYLKTG TCKFGATCKF  120
HHPREQAGIA GRVSLNILGY PFRPNETECA YYLRTGQCKF GSTCKFHHPQ PTNMMISLRG  180
SPIYPTVASP TTPGQQSYPG GITNWSRASF IPSPRWQGPS SYAPLILPQG MVSVPGWNAY  240
SASVSSSENL QQTNGNNQIY GTSNQNESVT GGSQASFSQF RSGSVPIGFY ALPRENVFPE  300
RPGQPECQFY MKTGDCKFGA VCRFHHPRER VPPAPDCLLS PIGLPLRPGE PLCDFYSRYG  360
ICKFGSSCKF NHPMGIFTYN YSISSPSGAP VHHFLGSSSG TSGLNLSSEG LVESGSTKPR  420
RISLSENRQL SSSDENIDAE G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714910.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U8LK670.0A0A1U8LK67_GOSHI; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGGorai.004G261700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1