PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05820_BGI-A2_v1.0
Common NameF383_01557
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Whirly
Protein Properties Length: 229aa    MW: 25153.8 Da    PI: 10.1108
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05820_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly178.41.4e-55511882137
                      Whirly   2 vyktkaalkvkavrptfealds..gnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaa 82 
                                 +yk+ka+l++ +v+ptf+++ds  g lk++r+G+++l++ +a++erkydWe++q+fals+tev++l+++++++++effhdp++
  Cotton_A_05820_BGI-A2_v1.0  51 IYKGKASLSISPVLPTFVKMDSdiGGLKVNRRGSMMLTFCPAIGERKYDWEQRQKFALSPTEVGSLISMGAHDASEFFHDPSM 133
                                 9******************99944679******************************************************** PP

                      Whirly  83 kgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                                 k+sn+G+v k l ++ l  G G++++l+vtn+++k+ne+f +Pv+ aefavl+++
  Cotton_A_05820_BGI-A2_v1.0 134 KSSNAGQVSKKLCIKALDGGNGYLISLTVTNNILKSNERFNIPVTTAEFAVLKTA 188
                                 *****************9999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.8E-6938206IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.79E-6242229IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.0E-5351187IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLKQCRSLLS RSLQSAKWGD GFESRAAFST SLQDFAATGN ANGRVFAPYT IYKGKASLSI  60
SPVLPTFVKM DSDIGGLKVN RRGSMMLTFC PAIGERKYDW EQRQKFALSP TEVGSLISMG  120
AHDASEFFHD PSMKSSNAGQ VSKKLCIKAL DGGNGYLISL TVTNNILKSN ERFNIPVTTA  180
EFAVLKTACS FALPHIMGWD RLTNQSPKGI KGSPSKVNSK QHFDLEWDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A3e-84422058169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B3e-84422058169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C3e-84422058169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D3e-84422058169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623849.11e-172PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0347e-91WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0B0NB181e-170A0A0B0NB18_GOSAR; tRNA pseudouridine synthase A 1
STRINGGorai.004G266000.11e-167(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123582731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.19e-88WHIRLY 2