PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05832_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 162aa    MW: 18924.3 Da    PI: 9.8528
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05832_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.82.5e-5481371129
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratks 80 
                                 +ppGfrFhPtdeel+++yL+kkv+ +k+++ evi+evd++k+ePw+L++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++
  Cotton_A_05832_BGI-A2_v1.0   8 VPPGFRFHPTDEELLHYYLTKKVSFQKFDM-EVIREVDLNKMEPWELQErcRIGSsPQNEWYFFSHKDRKYPTGSRTNRATNA 89 
                                 69****************************.99**************963433332456************************ PP

                         NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                 g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  Cotton_A_05832_BGI-A2_v1.0  90 GFWKATGRDKCIRN-SYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137
                                 *************9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-557145IPR003441NAC domain
PROSITE profilePS5100552.6718155IPR003441NAC domain
PfamPF023651.4E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGSTNGGVPP GFRFHPTDEE LLHYYLTKKV SFQKFDMEVI REVDLNKMEP WELQERCRIG  60
SSPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSYKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDGD DPQGNPTVST RSLYSHATLG PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-49813615140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6232414e-81JX623241.1 Gossypium hirsutum clone NBRI_GE70350 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478041.11e-108PREDICTED: protein BEARSKIN2
SwissprotQ9SV871e-100BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A0D2R4S81e-106A0A0D2R4S8_GOSRA; Uncharacterized protein
STRINGGorai.004G267300.11e-107(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52132648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-102NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]