PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05923_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 550aa MW: 62158.5 Da PI: 5.5169

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05923_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.6e-09	484	503	7	26
SGGGGTS--TTTTT-SS-SS CS zf-CCCH 7 rffartGtCkyGdrCkFaHg 26 ++f++tG Ck+G++C F+H+ Cotton_A_05923_BGI-A2_v1.0 484 QYFLKTGRCKFGSKCAFNHP 503 59*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.606	477	505	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.0E-6	484	503	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-4	485	503	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MSNGLTLTTD RSGLDNALPD EKLDSTQPDE TPGSPPSHPL SGYFCNDALQ LILNIAAEND 60 PWFKEHGLHS ERILPKFFLM PNATTMSVDL SIDSAILPLP PRDLVSMMTD VKTWASRFSH 120 IVYSGKGEKP SGTSLEILDI QKVTAEFLKP ISVVPFSTIE KITFLRFVKE IRHDMWAVVD 180 LDFDECSERL SRMTIGTSVA SKPKVENACR RKPSGVIIAK YDDSKSKVIW IETMEFPIDS 240 DWPFKAYCWI NVLKNDYRRM SSDFLSFKLG TENEGSRGEL LGVLKEMAKN IRIKYVDSIV 300 ASADRDGWSG HRQENKEIWL KHKLNSQGPY AGSCIFVAVV KFNVESKTSR PVFSYLREKN 360 LYIDWCHTRI TQWTDEVIRV ASPDGDTYCI TLNKDPFEGY VLQEASTDGF RSFVISSPIK 420 ESDFDQNLSK NEWSELVLYP SGFTIVPDMN LCISISLQLM DSTQQDAIKA MQQFHLDLIA 480 EIEQYFLKTG RCKFGSKCAF NHPSHVLATT SGVASENDEA SSIHEERTEE CSCSATCKGK 540 HPRREDHSQN

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MSNGLTLTTD RSGLDNALPD EKLDSTQPDE TPGSPPSHPL SGYFCNDALQ LILNIAAEND  60
PWFKEHGLHS ERILPKFFLM PNATTMSVDL SIDSAILPLP PRDLVSMMTD VKTWASRFSH  120
IVYSGKGEKP SGTSLEILDI QKVTAEFLKP ISVVPFSTIE KITFLRFVKE IRHDMWAVVD  180
LDFDECSERL SRMTIGTSVA SKPKVENACR RKPSGVIIAK YDDSKSKVIW IETMEFPIDS  240
DWPFKAYCWI NVLKNDYRRM SSDFLSFKLG TENEGSRGEL LGVLKEMAKN IRIKYVDSIV  300
ASADRDGWSG HRQENKEIWL KHKLNSQGPY AGSCIFVAVV KFNVESKTSR PVFSYLREKN  360
LYIDWCHTRI TQWTDEVIRV ASPDGDTYCI TLNKDPFEGY VLQEASTDGF RSFVISSPIK  420
ESDFDQNLSK NEWSELVLYP SGFTIVPDMN LCISISLQLM DSTQQDAIKA MQQFHLDLIA  480
EIEQYFLKTG RCKFGSKCAF NHPSHVLATT SGVASENDEA SSIHEERTEE CSCSATCKGK  540
HPRREDHSQN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX590773	1e-132	JX590773.1 Gossypium hirsutum clone NBRI_GE25763 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440900.1	0.0	PREDICTED: homeobox-leucine zipper protein ROC7-like
TrEMBL	A0A2P5YPL5	0.0	A0A2P5YPL5_GOSBA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.3	2e-23	homeodomain GLABROUS 2