PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06024_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 367aa    MW: 40272.7 Da    PI: 6.7577
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06024_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.89.2e-28176236259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                 dD y+WrKYGqKe+ gs++pr+YYrCt++   +Cp+kk+v+r ++d  ++e+tY g+H+++
  Cotton_A_06024_BGI-A2_v1.0 176 DDNYTWRKYGQKEILGSKYPRAYYRCTHQkmyNCPAKKQVQRLDNDFYTFEVTYIGQHTCT 236
                                 8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-26170236IPR003657WRKY domain
SuperFamilySSF1182901.96E-25173237IPR003657WRKY domain
SMARTSM007749.4E-36175237IPR003657WRKY domain
PROSITE profilePS5081121.012176238IPR003657WRKY domain
PfamPF031061.5E-24176235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDQQQQQHTT LSLILDGCKL AKELEESIGN LGNQLQPEIL SKSCDDIINI FVTAKQRLNN  60
NAHHHHHHHH HQDPSLFTHH LLHPPQDSSA HHMQTDPSLQ EWLKYGVITQ AVDMIQSCRP  120
SISMGGEIQA MDVSDSGKAA SSSSSQRSHR SRKDDEEKCK TRVAAPQMGN TDLPPDDNYT  180
WRKYGQKEIL GSKYPRAYYR CTHQKMYNCP AKKQVQRLDN DFYTFEVTYI GQHTCTMSST  240
APSIPQPPPL LHDQMVMTQA MVSQPALPPI SSSTTSSSIA PFGSWLSMEF SLGSGSGGRG  300
SGGAGSSSGG GSATGSRYGR DVEYPAVADM ADVMFNSGSS SSNSMDFIFP CAEDKWEAPG  360
SGDKKHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18176235968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697770.0KF669777.1 Gossypium hirsutum WRKY transcription factor 101 (WRKY101) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613850.10.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A068LCJ10.0A0A068LCJ1_GOSHI; WRKY transcription factor 101
STRINGGorai.012G014000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-49WRKY DNA-binding protein 55