PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_06375_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-PHD

Protein Properties

Length: 933aa MW: 102039 Da PI: 5.6534

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_06375_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.6	4.2e-13	861	903	10	52
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ L++ F++n+yp+++++e LAk+lg+t rqV+ WF N R Cotton_A_06375_BGI-A2_v1.0 861 AVTQGLQSSFKQNQYPDRAMKESLAKELGITFRQVSKWFENAR 903 56889************************************99 PP
2	PHD	41.2	3.9e-14	465	520	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++Cg+ ++++++lCdg C++ fH++Cl+++l +e++p + wlC+ C++k Cotton_A_06375_BGI-A2_v1.0 465 FCALCGSkdIPANNDIILCDGaCDRGFHQYCLQPPLLKEDIPPDdeGWLCPGCDCK 520 7****554459***66***************99999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	2.88E-14	455	523	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	5.7E-14	462	519	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.288	463	520	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	1.15E-26	465	517	No hit	No description
SMART	SM00249	1.2E-10	465	518	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	2.1E-11	465	520	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	466	517	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	3.8E-14	841	903	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.28E-11	845	904	IPR009057	Homeodomain-like
SMART	SM00389	1.7E-11	851	913	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-10	861	903	IPR001356	Homeobox domain
CDD	cd00086	3.93E-12	863	903	No hit	No description
PROSITE profile	PS50071	12.73	866	909	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence Send to blast
MIEVEHTGGS SSQANSENGN HSHFHPEEST SELANEFRSE CLLTEANGSG FMNTETSEET 60 AERSQPLCND LSKNTISESL GLLPEDSSKN IQADQISSPQ LCSAEPTFSS GELPEQQQQL 120 DSQSLPNGIG NSLSAGVSNE GMELNPKDII MGNGGKHLQL PSKDANPLGL PQELASTNPT 180 IQQPDRHCED ISKDSSLEQH ETTPKNLVKN SGQRKGGKTS KQVQKKNLRS LRSSDRVLRS 240 KSEEKSKATE SSKKSTATES SKKSTATESS KKSTAIESSK KSTATESSKK STATESRKKS 300 TATESSKKST ATESSKKPTA TESSKKSTAT ESSKKSTGTE SSNNLTNVDP SKQQKRKKRK 360 REKEKEEKKE VSDEYLRIRK HLRYLLNRIS YERSLIAAYS AEGWKGLSLE KLKPEKELQR 420 AASEILRRKL KIRDLFQRIE SLCTEGRLAE SLFDSEGEID SEDIFCALCG SKDIPANNDI 480 ILCDGACDRG FHQYCLQPPL LKEDIPPDDE GWLCPGCDCK FDCIELVNES QGTNFSLEDS 540 WEKVFPEAAL AAGGQNQDPN YGLPSDDSDD NDYNPDISEN DEKDQEDESS SDESDFTSAS 600 DEVEVPAKVD PYLGLPSDDS EDDDYNPDGL DQDHDNVAKS ESSSSDFSSD SDDLGAMLVD 660 DISSEKGHMS NGSSRKSKSK KPKLSGKKSL NSEVLTTMEP ASGEDDATVS EKRSIPRLDY 720 KRLYDETYGN VPSSSSDDED WNDGTAPRKK KIRNAEVATT SANGNASPTG SVSVSNGLKK 780 NPGEKRAPKR SANGLKQKPE EDHTPRRCTR KKSNRKGTAR SPAKLPKATP KSPAKLPEPT 840 PTPGSSGKKA GSSTYKRLGE AVTQGLQSSF KQNQYPDRAM KESLAKELGI TFRQVSKWFE 900 NARWFFNNSN NVSGASPKKV AGNDITPLAR RKK

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence Send to blast

MIEVEHTGGS SSQANSENGN HSHFHPEEST SELANEFRSE CLLTEANGSG FMNTETSEET  60
AERSQPLCND LSKNTISESL GLLPEDSSKN IQADQISSPQ LCSAEPTFSS GELPEQQQQL  120
DSQSLPNGIG NSLSAGVSNE GMELNPKDII MGNGGKHLQL PSKDANPLGL PQELASTNPT  180
IQQPDRHCED ISKDSSLEQH ETTPKNLVKN SGQRKGGKTS KQVQKKNLRS LRSSDRVLRS  240
KSEEKSKATE SSKKSTATES SKKSTATESS KKSTAIESSK KSTATESSKK STATESRKKS  300
TATESSKKST ATESSKKPTA TESSKKSTAT ESSKKSTGTE SSNNLTNVDP SKQQKRKKRK  360
REKEKEEKKE VSDEYLRIRK HLRYLLNRIS YERSLIAAYS AEGWKGLSLE KLKPEKELQR  420
AASEILRRKL KIRDLFQRIE SLCTEGRLAE SLFDSEGEID SEDIFCALCG SKDIPANNDI  480
ILCDGACDRG FHQYCLQPPL LKEDIPPDDE GWLCPGCDCK FDCIELVNES QGTNFSLEDS  540
WEKVFPEAAL AAGGQNQDPN YGLPSDDSDD NDYNPDISEN DEKDQEDESS SDESDFTSAS  600
DEVEVPAKVD PYLGLPSDDS EDDDYNPDGL DQDHDNVAKS ESSSSDFSSD SDDLGAMLVD  660
DISSEKGHMS NGSSRKSKSK KPKLSGKKSL NSEVLTTMEP ASGEDDATVS EKRSIPRLDY  720
KRLYDETYGN VPSSSSDDED WNDGTAPRKK KIRNAEVATT SANGNASPTG SVSVSNGLKK  780
NPGEKRAPKR SANGLKQKPE EDHTPRRCTR KKSNRKGTAR SPAKLPKATP KSPAKLPEPT  840
PTPGSSGKKA GSSTYKRLGE AVTQGLQSSF KQNQYPDRAM KESLAKELGI TFRQVSKWFE  900
NARWFFNNSN NVSGASPKKV AGNDITPLAR RKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	354	360	KRKKRKR
2	355	360	RKKRKR
3	355	362	RKKRKREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017615950.1	0.0	PREDICTED: homeobox protein HAT3.1
Refseq	XP_017615952.1	0.0	PREDICTED: homeobox protein HAT3.1
TrEMBL	A0A1U8N9N8	0.0	A0A1U8N9N8_GOSHI; homeobox protein HAT3.1-like
STRING	Gorai.012G148900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7270	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	3e-88	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain