PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06383_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 192aa    MW: 22252.6 Da    PI: 10.5801
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06383_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF351.9e-111759146
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                                k ienk  + v fskRr gi KK +ELS+   +e++ i+fs+tgk 
  Cotton_A_06383_BGI-A2_v1.0 17 KMIENKEDQLVVFSKRRLGIYKKISELSI---TEILFIVFSPTGKP 59
                                68**************************9...9***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.9E-16965IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.54966IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-161077IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-81131IPR002100Transcription factor, MADS-box
PfamPF003196.2E-131962IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-83146IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MASTGKKTRG RKKTQMKMIE NKEDQLVVFS KRRLGIYKKI SELSITEILF IVFSPTGKPF  60
SFGCPSIESV SNHFLSRNRP INDNTNILIE AYRMVRTNKL VQHYNEVRSQ IDAIKRKKKV  120
LVSTQQTSGT NNTNHWWKTP IHQCNPRELD KLYSRFSELA HLCHIAWCKK IVDTSSMSAS  180
TYFGNGHHHQ EL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016673103.12e-65PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P5X8591e-124A0A2P5X859_GOSBA; Uncharacterized protein
STRINGGorai.012G148000.11e-115(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-20AGAMOUS-like 57