PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06569_BGI-A2_v1.0
Common NameF383_05934
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 539aa    MW: 59819.1 Da    PI: 5.2626
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06569_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.51.1e-1371685381374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l+elL++cA+a++s+d+ +a+ l+a+l++++s +g+pmqRl ay++e+L arla+s+s++ykal+++e +   s e l+++++
  Cotton_A_06569_BGI-A2_v1.0 168 LKELLFACAKAIESNDMYMADCLIAQLRQMVSVSGEPMQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---SPELLSYMHI 247
                                 5799*****************************************************************9...9********* PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 ++e++P++kf+++ aN aI ea+++e+rvHiiDf+i qG QW++L++aLa Rp+gpps+RiTg+++p+s   +   le +g+r
  Cotton_A_06569_BGI-A2_v1.0 248 LYEICPYFKFGYMSANGAIAEAMKEESRVHIIDFQIAQGSQWLTLINALAGRPGGPPSIRITGIDDPTSAfaRGGGLEIVGQR 330
                                 ********************************************************************999999********* PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L+k+Ae+++vpfef++ +a + ++++le+L ++pgEa+aVn++++lh+++desv+++++rd++L+l kslsPkvv++veqea+
  Cotton_A_06569_BGI-A2_v1.0 331 LRKLAESCKVPFEFHA-AAISGTEVQLENLGIQPGEAIAVNFAMMLHHMPDESVDTQNHRDRLLRLAKSLSPKVVTLVEQEAN 412
                                 ****************.8999************************************************************** PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +n+++F +rfle++ y+s++f+s+++++pre++eri+vE+++l+reivn++aceg+er+er e ++kWr+r+ +aGF+p pls
  Cotton_A_06569_BGI-A2_v1.0 413 TNTSPFIRRFLETMGYFSSIFESIDVSMPREHKERINVEQHCLAREIVNIIACEGKERVERYELFGKWRSRFIMAGFTPSPLS 495
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  ++++++k+ll+ + +  y++ee++g l+lgW+dr++++ +aWr
  Cotton_A_06569_BGI-A2_v1.0 496 PFVNATIKTLLQSYCD-KYTLEERDGVLYLGWMDRAIIASCAWR 538
                                 ***************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.416142519IPR005202Transcription factor GRAS
PfamPF035143.7E-135168538IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MQTSQKHKIT GKCIDWPVQE LESYCCPPNQ SLEPCQSGSD DGSNSVQHSI PNLERYCTLD  60
SSSSVQNSSS TASFSPDGSP VSQQNYTYPL DLHHSPENTC ASPISGSCVI DNENDLGLMI  120
RQLETAMLGI DSGDLDLHAI AASGRATEVS VEAERWKYMK EMIARGDLKE LLFACAKAIE  180
SNDMYMADCL IAQLRQMVSV SGEPMQRLGA YMLEGLVARL ASSGSSIYKA LRCKEPASPE  240
LLSYMHILYE ICPYFKFGYM SANGAIAEAM KEESRVHIID FQIAQGSQWL TLINALAGRP  300
GGPPSIRITG IDDPTSAFAR GGGLEIVGQR LRKLAESCKV PFEFHAAAIS GTEVQLENLG  360
IQPGEAIAVN FAMMLHHMPD ESVDTQNHRD RLLRLAKSLS PKVVTLVEQE ANTNTSPFIR  420
RFLETMGYFS SIFESIDVSM PREHKERINV EQHCLAREIV NIIACEGKER VERYELFGKW  480
RSRFIMAGFT PSPLSPFVNA TIKTLLQSYC DKYTLEERDG VLYLGWMDRA IIASCAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-651725388375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642008.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0B0NHS10.0A0A0B0NHS1_GOSAR; Scarecrow-like protein 5
STRINGGorai.002G096300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]