PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06607_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 85aa    MW: 9788.27 Da    PI: 10.3681
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06607_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.11.3e-201158148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd +lvd+++++G   Wk++++  g++R++k+c++rw +yl
  Cotton_A_06607_BGI-A2_v1.0 11 KGPWTPEEDRILVDYIQKHGHSKWKSVPALAGLNRCGKSCRLRWTNYL 58
                                79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-26561IPR009057Homeodomain-like
PROSITE profilePS5129426.109662IPR017930Myb domain
SMARTSM007179.9E-161060IPR001005SANT/Myb domain
PfamPF002491.2E-181158IPR001005SANT/Myb domain
SuperFamilySSF466898.74E-251285IPR009057Homeodomain-like
CDDcd001677.44E-121358No hitNo description
Gene3DG3DSA:1.10.10.601.8E-96285IPR009057Homeodomain-like
PROSITE profilePS512948.3336385IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MKGNDKNGLK KGPWTPEEDR ILVDYIQKHG HSKWKSVPAL AGLNRCGKSC RLRWTNYLRP  60
NIKRGNFSSE EEQLIIDLHA LMGNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-1698525100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434998.12e-57PREDICTED: transcription repressor MYB6-like isoform X1
SwissprotQ9SBF33e-41MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A0D2PJS58e-56A0A0D2PJS5_GOSRA; Uncharacterized protein
STRINGGorai.007G362200.11e-56(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.11e-43myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]