PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06651_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 210aa    MW: 23390 Da    PI: 4.5935
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06651_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.24.6e-09146197156
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 s y+GV+++  + r++A ++d s++g +k+ + g ++ +e Aa+a++ a++kl+ge
  Cotton_A_06651_BGI-A2_v1.0 146 SIYRGVSRY--TCRYEAFLWDNSDQG-QKS-RTGGYDDEESAARAYDIAALKLWGE 197
                                 579***875..69********66655.344.55779999**************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-13146205IPR016177DNA-binding domain
CDDcd000184.26E-15146205No hitNo description
Gene3DG3DSA:3.30.730.101.1E-11147204IPR001471AP2/ERF domain
PROSITE profilePS5103213.235147204IPR001471AP2/ERF domain
SMARTSM003805.5E-10147210IPR001471AP2/ERF domain
PfamPF008472.6E-4147197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDFPLSPIPF PWSPQLVPQL EDVNIAPIDN GGLDNLCLQN SGVSPNMSQP NYGPNGEGNS  60
FGNQIPDPTS VIQNPAELPY NVMQEMMDFL IPLEANGEGE TSKEKSKRKP RNTSKKQEQG  120
AEDARSNCKR KRQARQEPRT FAETSSIYRG VSRYTCRYEA FLWDNSDQGQ KSRTGGYDDE  180
ESAARAYDIA ALKLWGEAAP LNFPVMLPLT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628954.11e-149PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A0D2TS661e-142A0A0D2TS66_GOSRA; Uncharacterized protein
STRINGGorai.007G357900.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2439834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.22e-21AINTEGUMENTA-like 6