PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06773_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 161aa    MW: 18045.9 Da    PI: 9.1433
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06773_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000184466123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                ++C++C + F ++  L  H++ H
  Cotton_A_06773_BGI-A2_v1.0 44 FSCNYCQRKFFSSQALGGHQNAH 66
                                89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-64071No hitNo description
PROSITE profilePS5015711.0114471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MNYQPNTSLR LSLPNDQLNL DLALEPSSSS SSSNSPTTTE PRVFSCNYCQ RKFFSSQALG  60
GHQNAHKLER TLAKKSRELS SSVQIHGSSL SGFSHPQRMQ SHVATFEQHH RAGRFAGEIG  120
YGRRDINYGP RDGMMGSWSS KGYRPEDVQD EFSHLDLSLR L
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6185422e-45JX618542.1 Gossypium hirsutum clone NBRI_GE64060 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625729.11e-117PREDICTED: zinc finger protein 2
SwissprotQ392611e-33ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A1U8LCZ81e-115A0A1U8LCZ8_GOSHI; zinc finger protein 2-like
TrEMBLA0A2P5X5Y51e-115A0A2P5X5Y5_GOSBA; Uncharacterized protein
STRINGGorai.004G031300.11e-107(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-35zinc finger protein 2