PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06788_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 559aa    MW: 60948.6 Da    PI: 6.6899
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06788_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.84.1e-32216273260
                                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Cotton_A_06788_BGI-A2_v1.0 216 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQIMEIIYKGTHDHPK 273
                                 8****************************************.***************85 PP
2WRKY106.41.5e-33375433159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Cotton_A_06788_BGI-A2_v1.0 375 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHN 433
                                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.974210274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-26212274IPR003657WRKY domain
SuperFamilySSF1182906.02E-25213274IPR003657WRKY domain
SMARTSM007741.5E-33215273IPR003657WRKY domain
PfamPF031061.5E-24216272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37360435IPR003657WRKY domain
SuperFamilySSF1182902.09E-29367435IPR003657WRKY domain
PROSITE profilePS5081138.434370435IPR003657WRKY domain
SMARTSM007744.0E-39375434IPR003657WRKY domain
PfamPF031064.0E-26376432IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MEEQILAPSS SLATGATQHV LSGSAGSGGA RYKLVAPSKL PISRSACLTT PPGLSPSSFL  60
ESPVLLSDVK VEPSPTTGSL FKPQAVHARV ASSTYPESVA CSNAFDERNT SCFEFKPHPI  120
SNMASADLNH QRSEQSLHIQ GQNGTVLFDS SASVKSEMAG LSNELSLSMP VHTATSVVSV  180
PPEVDVEELS QMGNPNIGIQ SGQSDHRVGG QSVSFDDGYN WRKYGQKHVK GSEFPRSYYK  240
CTHPNCEVKK LFERSHDGQI MEIIYKGTHD HPKPQPSCRY SSSNIVSGQE ERSDKLSSLN  300
GRDSIYGQTV HSVERNSTAD RLPVTANDDN VDDVDDDDPL SKRRKMDVAI DIIPVVRPIR  360
EPRVVVQTLS EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTNAGCPVRK HVERASHDPK  420
AVITTYEGKH NHNVPTAKTN THDTTGPIPV NGPSRIRSED NGAISLDLGV GISSILENSS  480
NEHQELHSEL VQCHPQTGGS SFKFVQPHPM AAYYSVLNSS DMNQYGSREN PNQGPGVEIT  540
PLNHSYAFPE SIGRILTGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36215435877Probable WRKY transcription factor 4
2lex_A4e-36215435877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697630.0KF669763.1 Gossypium hirsutum WRKY transcription factor 22 (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624240.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D2P6600.0A0A0D2P660_GOSRA; Uncharacterized protein
STRINGGorai.004G033200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-174WRKY family protein