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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_06807_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
GRAS |
| Protein Properties |
Length: 437aa MW: 50073.5 Da PI: 7.0095 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_06807_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 409.2 | 3.9e-125 | 41 | 437 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaa 80
+++lL++cAe vs++d+ +a +lL+ ls +sp+gd+++Rl++ f++AL+ r++r + ++ + l+ s+ ++
Cotton_A_06807_BGI-A2_v1.0 41 MRQLLISCAELVSQSDFPAAIRLLSILSSSSSPSGDSIERLVHQFVKALSLRINRlHHHHHHHGLAGSSLMRMMndINF---- 119
589****************************************************544445555544333322223333.... PP
GRAS 81 l....................klfsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....eg 138
+++++P+++f+hltaNqaIlea++ g++++HiiDfdi++G+QWp+L+qaLa+R+ ++
Cotton_A_06807_BGI-A2_v1.0 120 PitstagpvnfdidpslqscyLSLNQITPFIRFAHLTANQAILEAIQvGQQCIHIIDFDIMHGVQWPPLMQALAERSanthHP 202
23345888888888888765344***********************94669**************************888778 PP
GRAS 139 ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vak.rledlel.eeLrvkpgEalaVnlvlqlhrllde 216
pp+lRiTg g+ + + l++tg+rL kfA++lg++fef++l ++ ++ + ++ ++ + p+EalaVn++l lhrll++
Cotton_A_06807_BGI-A2_v1.0 203 PPKLRITGTGH----DLNILHRTGDRLFKFAQSLGLRFEFHPLlvlNEDpTWIATNFtSMVTILPDEALAVNCMLYLHRLLKD 281
99*********....9**************************96532223454555415668889****************66 PP
GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
+ + +L+ +k l+P+vv+v+e+ea+hn++ Fl+rf+eal+yy+a+fdslea+lp++s+er vE+ ++greiv++va
Cotton_A_06807_BGI-A2_v1.0 282 DSRDI---RLFLHHIKALNPTVVTVAEREANHNHPLFLQRFVEALDYYTAIFDSLEATLPPNSRERLAVEQIWFGREIVDIVA 361
65555...59************************************************************************* PP
GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
+eg++rrerhe+le+W+ l+++GF +vpls +a +qaklllr ++ s+gy+++ +++++lgW++rpL+svS+Wr
Cotton_A_06807_BGI-A2_v1.0 362 AEGENRRERHERLETWEVILRSSGFINVPLSPFAHSQAKLLLRLHYpSEGYQLQIVNNCFFLGWQNRPLFSVSSWR 437
***************************************************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 437 aa
Download sequence Send
to blast |
MLSLLISPFI DQEEEEGLFL FVASDLHSQH RQQRRQPPLK MRQLLISCAE LVSQSDFPAA 60
IRLLSILSSS SSPSGDSIER LVHQFVKALS LRINRLHHHH HHHGLAGSSL MRMMNDINFP 120
ITSTAGPVNF DIDPSLQSCY LSLNQITPFI RFAHLTANQA ILEAIQVGQQ CIHIIDFDIM 180
HGVQWPPLMQ ALAERSANTH HPPPKLRITG TGHDLNILHR TGDRLFKFAQ SLGLRFEFHP 240
LLVLNEDPTW IATNFTSMVT ILPDEALAVN CMLYLHRLLK DDSRDIRLFL HHIKALNPTV 300
VTVAEREANH NHPLFLQRFV EALDYYTAIF DSLEATLPPN SRERLAVEQI WFGREIVDIV 360
AAEGENRRER HERLETWEVI LRSSGFINVP LSPFAHSQAK LLLRLHYPSE GYQLQIVNNC 420
FFLGWQNRPL FSVSSWR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KP236114 | 0.0 | KP236114.1 Gossypium hirsutum LAS-like transcription factor (LAS) mRNA, complete cds. |
