PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06823_BGI-A2_v1.0
Common NameF383_19191
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 404aa    MW: 45350 Da    PI: 6.394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06823_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.8e-06528226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                k++lC+ffa  G C  G++C F+H+
  Cotton_A_06823_BGI-A2_v1.0  5 KRVLCKFFAH-GACFKGENCEFSHD 28
                                89****6666.*************5 PP
2zf-CCCH25.72.1e-083656526
                                --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                                +C ++++ G+C+yG++C++ H+
  Cotton_A_06823_BGI-A2_v1.0 36 ICTYYQK-GICSYGSQCRYEHV 56
                                7******.***********997 PP
3zf-CCCH20.96.5e-07145167326
                                 S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                 +++C+ fa+ G C++Gd+C+ +Hg
  Cotton_A_06823_BGI-A2_v1.0 145 RPICS-FAAAGNCPRGDNCPHIHG 167
                                 78999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.1E-5230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-8328IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6333158IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-43257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53455IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-43655IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-63656IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216142169IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4143168IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4145167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4148167IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.94E-13199275No hitNo description
Gene3DG3DSA:3.30.40.108.2E-10205270IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.58E-4210270No hitNo description
PfamPF000974.6E-7211268IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.238211269IPR001841Zinc finger, RING-type
SMARTSM001842.8E-7211268IPR001841Zinc finger, RING-type
PROSITE patternPS005180235244IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.77298327IPR000571Zinc finger, CCCH-type
SMARTSM003560.15298326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MPKTKRVLCK FFAHGACFKG ENCEFSHDWK DPPNNICTYY QKGICSYGSQ CRYEHVKASQ  60
TDLSASSSST KPRQFGVSGS APLGPSTSTY RGSVVLPATS GEFPGSNGGF LPPSTNQAWH  120
LESGQQDLLG DGDVLQPRSA NLVERPICSF AAAGNCPRGD NCPHIHGDLC PTCGKHCLHP  180
FRAEEREEHI KMCEKKQKHL EALKYSQEIE CSVCLDRVLS KPTAAERKFG LLSECDHPFC  240
ISCIRNWRSS SPSSGMDVNT ALRACPICRK LSYFVIPSVI WYSTPEEKQE IIDSYKAKLR  300
SIDCKHFNFG NGNCPFGTSC FYKHTVKPGS YAWKYHRPPP RRSNVIDMDS IFDVFEHLIA  360
EDEMNIFDAE DLENDDISME MALFLMQLDY DSSDSSSDEE NFHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625969.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotE0X9N41e-152C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0B0MJJ80.0A0A0B0MJJ8_GOSAR; Uncharacterized protein
STRINGGorai.004G036900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-146C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]