PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06826_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 318aa    MW: 35615.8 Da    PI: 6.5067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06826_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.7e-152269148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  Cotton_A_06826_BGI-A2_v1.0 22 KGLWSPEEDEKLMKYMLSNGQGCWSDIARNAGLQRCGKSCRLRWINYL 69
                                678*******************************************97 PP
2Myb_DNA-binding45.12.3e-1475119147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rg + ++E++l+++++  lG++ W+ Ia++++ gRt++++k++w++ 
  Cotton_A_06826_BGI-A2_v1.0  75 RGVFCPQEEDLIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 119
                                 677889****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0151769IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-221771IPR009057Homeodomain-like
SuperFamilySSF466897.81E-2820116IPR009057Homeodomain-like
SMARTSM007173.3E-112171IPR001005SANT/Myb domain
PfamPF002496.7E-142269IPR001005SANT/Myb domain
CDDcd001671.18E-92569No hitNo description
PROSITE profilePS5129423.37570124IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2472125IPR009057Homeodomain-like
SMARTSM007171.2E-1374122IPR001005SANT/Myb domain
PfamPF002494.3E-1375119IPR001005SANT/Myb domain
CDDcd001677.76E-1080117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MRKPVPDPPN MGKDNNKGKL RKGLWSPEED EKLMKYMLSN GQGCWSDIAR NAGLQRCGKS  60
CRLRWINYLR PDLKRGVFCP QEEDLIIHLH SILGNRWSQI AARLPGRTDN EIKNFWNSTL  120
KKRLKTTTTT PTCSSLNNSD SISEQPRTDG VGAIFPVNEH DIDIVGASLS SSSSSPTSMP  180
YPSMVTLNQF DPFPHVNNSY DMKGSFNAPT RLTTTQGGVG EGLFYGDYGK IGLEGEFSLP  240
PLETTAAIAN NNNNSCLNNT AGEKNHGQSF KVEVDNMFGL ENNHHHWHGE SLRMGEWDFE  300
ELMDNISSFP NFLDNFHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26201265110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125LKKRLKT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5824991e-105JX582499.1 Gossypium hirsutum clone NBRI_GE15336 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624938.10.0PREDICTED: transcription factor MYB46-like
SwissprotQ9C6U17e-83MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A1U8LH360.0A0A1U8LH36_GOSHI; transcription factor MYB46-like
STRINGGorai.004G037300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70772642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-63myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]