PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06910_BGI-A2_v1.0
Common NameF383_06768
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 271aa    MW: 30074.8 Da    PI: 8.512
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06910_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.4e-32106159255
                     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Cotton_A_06910_BGI-A2_v1.0 106 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 159
                                 9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-15103160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28104160IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23106159IPR006447Myb domain, plants
PfamPF002491.5E-7107158IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MMRTTALPDL SLQISPPSVK EMADDGLSMK SIYSDRSSTT DSGSSGSDLS QENGYFNNPI  60
EPTLSLGFEM VHHHHHHQYQ PQIYGRDFKR SSRTNINGAK RSIRAPRMRW TTTLHAHFVH  120
AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KSTDKGSGQM QTDMSLNQRS  180
GIVDLDGRLI SPQPTPQRTQ SGSWLPSLEV NNLSISSNGN GLTLHPNDAK VDGDNKVLHV  240
SNPDMLLNLE FTLGRPSFAH ESSNDLTLLK C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-17107161458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-17107161458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-17107161357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-17107161357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-17107161357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-17107161357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-17107161458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-17107161458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-17107161458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-17107161458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-17107161458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-17107161458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719894e-82KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640800.10.0PREDICTED: probable transcription factor KAN4
SwissprotQ9FJV53e-70KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A0B0PKZ00.0A0A0B0PKZ0_GOSAR; Putative transcription factor KAN4-like protein
STRINGGorai.010G015500.11e-178(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65722844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.11e-69G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]