PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_06957_BGI-A2_v1.0

Common Name

F383_20514

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 353aa MW: 38019.3 Da PI: 4.8743

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_06957_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.5	8.1e-30	169	222	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Cotton_A_06957_BGI-A2_v1.0 169 RQRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 222 58*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.74E-19	166	226	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.24	166	225	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.5E-30	168	227	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	170	222	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-8	172	221	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MGGEVKIGVF EANGRDDEAI ATATDAVVDE EDDVNERVLE WEMGLPNSDD LTPLSQLLVP 60 PELASVFSIS PEPRRTALDV NRASQDTLSS LRSTGAHSST TNNNNNNNNN NNFRSFDDPM 120 VVESEGDGSG SGSGSDPKKM RMMEIAEEAD SAVRTAENSD DPSGKTVKRQ RLVWTPQLHK 180 RFVDVVAHLG IKNAVPKTIM QLMNVEGLTR ENVASHLQKY RLYLKRMQGL SNEGPSASDQ 240 LFASTPVPQS MHANGAGVGG GGGIGVGGGS VNSNGHVGMT LPMAYGASMI PMPMPMYGPV 300 HQGGNHHPQN GYEANSYGMM QQRDWRLCLS SYTAWCQTRI AEGAHVDPPL LLE

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MGGEVKIGVF EANGRDDEAI ATATDAVVDE EDDVNERVLE WEMGLPNSDD LTPLSQLLVP  60
PELASVFSIS PEPRRTALDV NRASQDTLSS LRSTGAHSST TNNNNNNNNN NNFRSFDDPM  120
VVESEGDGSG SGSGSDPKKM RMMEIAEEAD SAVRTAENSD DPSGKTVKRQ RLVWTPQLHK  180
RFVDVVAHLG IKNAVPKTIM QLMNVEGLTR ENVASHLQKY RLYLKRMQGL SNEGPSASDQ  240
LFASTPVPQS MHANGAGVGG GGGIGVGGGS VNSNGHVGMT LPMAYGASMI PMPMPMYGPV  300
HQGGNHHPQN GYEANSYGMM QQRDWRLCLS SYTAWCQTRI AEGAHVDPPL LLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	4e-34	169	225	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:21236673, ECO:0000269\|PubMed:21753751, ECO:0000269\|PubMed:22311777}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:17132630, ECO:0000269\|PubMed:21753751}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615017	0.0	JX615017.1 Gossypium hirsutum clone NBRI_GE58778 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017606371.1	0.0	PREDICTED: transcription factor PCL1-like isoform X3
Swissprot	Q9SNB4	2e-80	PCL1_ARATH; Transcription factor LUX
TrEMBL	A0A0B0NHE9	0.0	A0A0B0NHE9_GOSAR; Pumilio 2
STRING	Gorai.009G097100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4055	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.3	2e-76	G2-like family protein

Publications ? help Back to Top
Higham CF,Husmeier D A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana. BMC Bioinformatics, 2013. 14 Suppl 10: p. S3 [PMID:24267177]