PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_07392_BGI-A2_v1.0

Common Name

F383_04453

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 477aa MW: 53756.4 Da PI: 5.1197

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07392_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.1	3.7e-35	24	114	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl k+y++++d+++++++sws++++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ Cotton_A_07392_BGI-A2_v1.0 24 FLLKTYDMVDDSATDDIVSWSSHNKSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANE 97 9**************************************************************999.........** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkk 101 F kg+k+ll++i+rkk Cotton_A_07392_BGI-A2_v1.0 98 DFVKGQKHLLKNIHRKK 114 *************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	8.8E-62	20	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.07E-36	20	113	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.9E-38	21	113	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.2E-31	24	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.2E-19	24	47	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.2E-19	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	63	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.2E-19	75	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MASTVPLTSA AGSGGGGGCG VAPFLLKTYD MVDDSATDDI VSWSSHNKSF VVWNPPEFAR 60 LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFANEDFV KGQKHLLKNI HRKKPIHSHS 120 NPQGSFVDPE RAGFEEEIER LSREKTALEA NVLRFREERS AAKHQIEELT LRADQMEQRQ 180 ETLFNFLEKA VQDSAFVEHL VRKIESMESM DVTAYNKKRR LPQIDRIEPV GEICLLDNNN 240 NSSSSRAEFG NIFHQDFSDK LRLELSPAVS DIHLVSQSTQ SSDEDGVSPR IRISEGEPKD 300 AYMRSEGLLF APERLDLSES SRSFTLQQSL NSSDEPDNHI SCLLNLTLAS SSSQVNRSPS 360 LTMMSQLGQE IGKDPKSRSN ANSKDSDTRA SGNSRNMING EATLSSPKED LNTNQKPATP 420 PVRVNDVFWE RFLTERPDSS DDEESNSDHQ ANPYKEDDKS STYGLARNAK NMEQLNL

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MASTVPLTSA AGSGGGGGCG VAPFLLKTYD MVDDSATDDI VSWSSHNKSF VVWNPPEFAR  60
LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFANEDFV KGQKHLLKNI HRKKPIHSHS  120
NPQGSFVDPE RAGFEEEIER LSREKTALEA NVLRFREERS AAKHQIEELT LRADQMEQRQ  180
ETLFNFLEKA VQDSAFVEHL VRKIESMESM DVTAYNKKRR LPQIDRIEPV GEICLLDNNN  240
NSSSSRAEFG NIFHQDFSDK LRLELSPAVS DIHLVSQSTQ SSDEDGVSPR IRISEGEPKD  300
AYMRSEGLLF APERLDLSES SRSFTLQQSL NSSDEPDNHI SCLLNLTLAS SSSQVNRSPS  360
LTMMSQLGQE IGKDPKSRSN ANSKDSDTRA SGNSRNMING EATLSSPKED LNTNQKPATP  420
PVRVNDVFWE RFLTERPDSS DDEESNSDHQ ANPYKEDDKS STYGLARNAK NMEQLNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-24	12	113	17	129	Heat shock factor protein 1
5d5v_B	9e-24	12	113	17	129	Heat shock factor protein 1
5d5v_D	9e-24	12	113	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ748621	0.0	KJ748621.1 Gossypium hirsutum HSF18 (HSF18) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608522.1	0.0	PREDICTED: heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-156	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A2P5VUB4	0.0	A0A2P5VUB4_GOSBA; Uncharacterized protein
STRING	Gorai.006G224000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-152	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]