PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07676_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 225aa    MW: 25227.3 Da    PI: 5.7942
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07676_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19104154255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +ykGVr+++ +g ++AeIrdp++ng  +r++lg++ t e+Aa a+++a+ k++g
  Cotton_A_07676_BGI-A2_v1.0 104 HYKGVRRRP-WGTYAAEIRDPKKNG--ARIWLGTYETLEDAALAYDRAAFKMRG 154
                                 6********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-14104154IPR001471AP2/ERF domain
CDDcd000181.08E-29104164No hitNo description
SMARTSM003803.7E-36104168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-31104163IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-22104163IPR016177DNA-binding domain
PROSITE profilePS5103223.09104162IPR001471AP2/ERF domain
PRINTSPR003672.3E-12105116IPR001471AP2/ERF domain
PRINTSPR003672.3E-12144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MYCEATSDLD LRLLDSIRRH LLEDDDFETQ YPATFSENLA NVQLPITSAQ MGCSKTDAVA  60
INVDQWITFD QLFDAAEAAA EVSFPSCEMS SKADTPQTPP KKVHYKGVRR RPWGTYAAEI  120
RDPKKNGARI WLGTYETLED AALAYDRAAF KMRGSKAKLN FPHLIGSDQV QPVRLSNNKR  180
RSPEPCSPSS SSSMSDDGTP KSKRRISELG SDFKLDLYQL MSTEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-31101169270ATERF1
3gcc_A5e-31101169270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0038090.0JN003809.1 Gossypium barbadense ethylene-responsive element-binding protein 6 (EREB6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612716.11e-168PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404792e-45ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A2P5XKX31e-165A0A2P5XKX3_GOSBA; Uncharacterized protein
STRINGGorai.007G086000.11e-145(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-41ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]