PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07707_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 458aa    MW: 51226.4 Da    PI: 7.9691
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07707_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001785102219
                                 EETTTTEEESSHHHHHHH CS
                     zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                                 +C++Cgk F ++ ++  H
  Cotton_A_07707_BGI-A2_v1.0  85 VCENCGKEFFSWKSFLEH 102
                                 6*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.52E-51036No hitNo description
PROSITE profilePS501578.7251335IPR007087Zinc finger, C2H2
SMARTSM003550.481335IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
PfamPF139124.1E-41535IPR007087Zinc finger, C2H2
SMARTSM0035528084104IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.9E-6222245No hitNo description
PfamPF139121.3E-9223247IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076223250IPR007087Zinc finger, C2H2
SMARTSM003550.13223245IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280225245IPR007087Zinc finger, C2H2
SuperFamilySSF576673.9E-6289316No hitNo description
PfamPF139122.4E-13293317IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369294316IPR007087Zinc finger, C2H2
SMARTSM003550.44294316IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280296316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MAFIVDQQSE FKYFCKICNK RFGCGRALGG HMMAHGIGDE SRFIDDDDLA SDWEDKLLEG  60
NVVPPNNERM YRLRTNPNRL KSCRVCENCG KEFFSWKSFL EHGKCSSRPR DIAESLVSSQ  120
GSEGDDDGIT RRGSSGYCSK RKRSLRSEVG NFNAFSSPSS EEEDLANCLM MLSNATVVPL  180
VTEPEESCTS ASKEEERRNT MNFSTHAIAC RPRVPTDKAK GLFECKACKK VFNSHQALGG  240
HRASHKKVKG CFAARVDDSL ADEDHHGFFL KKPTSTFRFD NTLASTSKKK SKVHECSICH  300
RVFSSGQALG GHKRCHWITS NSPVETSSLV KFHQLQHQVQ QIQQTQRPNF VDDSEPLDLN  360
LPAPVDKLVR RNHIHPSSFD VSTKIYLQPC SSIDATEKED NQNHLQVDNA NNNCNNSKQN  420
EEDKAKSKLK LAKLSELKDI NMSGGSSPWL QVGIGSDP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613943.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2P5XXD90.0A0A2P5XXD9_GOSBA; Uncharacterized protein
STRINGGorai.007G088600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13535616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-33C2H2-like zinc finger protein