PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07740_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 224aa    MW: 24975.6 Da    PI: 8.1532
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07740_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.67.7e-37998189
                      DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84
                                +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk++Gasn +k+l+++p ++r da+ +l+yeA ar+rdPvyG+vg++++lq
  Cotton_A_07740_BGI-A2_v1.0  9 PCGACKFLRRKCVKGCIFAPYFDSDQgMAHFAAVHKVYGASNASKMLQRIPVHKRLDAVVTLCYEALARVRDPVYGCVGHLFTLQ 93
                                7***********************9988********************************************************* PP

                      DUF260 85 qqleq 89
                                qq+++
  Cotton_A_07740_BGI-A2_v1.0 94 QQVCS 98
                                **996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.7428110IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-36998IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSGNNGGGPC GACKFLRRKC VKGCIFAPYF DSDQGMAHFA AVHKVYGASN ASKMLQRIPV  60
HKRLDAVVTL CYEALARVRD PVYGCVGHLF TLQQQVCSPL TFILDFLSFF FVLELNREKS  120
SFCNVKQLRY DICVVNLQAE LAYTQARLST LQRHPPSSSE IGSELMSSSN MSTHFDPPQQ  180
TSVGLTSFPN SFDQVAENEE LQVLTREFVS RYLPGVRFHP STST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-34596797LOB family transfactor Ramosa2.1
5ly0_B1e-34596797LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710129.11e-130PREDICTED: LOB domain-containing protein 19-like
RefseqXP_017614887.11e-130PREDICTED: LOB domain-containing protein 19-like
SwissprotO221324e-59LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A0B0MXZ81e-128A0A0B0MXZ8_GOSAR; LOB domain-containing 19-like protein
TrEMBLA0A1U8LAF31e-128A0A1U8LAF3_GOSHI; LOB domain-containing protein 19-like
TrEMBLA0A2P5XPI91e-128A0A2P5XPI9_GOSBA; Uncharacterized protein
STRINGGorai.007G091600.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.16e-60LOB domain-containing protein 19